SMTL ID : 4aqt.1

Laminin gamma1 LN-LE1-2 structure

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 3.20 Å

Oligo State

homo-dimer

Ligands

2 x NAG- NAG- BMA: beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Non-covalent)

NAG-NAG-BMA.1: 5 residues within 4Å: Chain A: N.103, Y.132, W.141, R.219, T.221 No protein-ligand interaction detected (PLIP) NAG-NAG-BMA.4: 5 residues within 4Å: Chain B: N.103, Y.132, W.141, R.219, T.221 No protein-ligand interaction detected (PLIP)

2 x CA: CALCIUM ION(Non-covalent)

CA.2: 6 residues within 4Å: Chain A: F.74, D.77, Y.78, N.79, T.85, S.247 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:F.74, A:D.77, A:T.85, A:S.247 CA.5: 6 residues within 4Å: Chain B: F.74, D.77, Y.78, N.79, T.85, S.247 4 PLIP interactions: 4 interactions with chain B Metal complexes: B:F.74, B:D.77, B:T.85, B:S.247

2 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.3: 3 residues within 4Å: Chain A: F.28, N.29, T.76 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:F.28, A:N.29 NAG.6: 3 residues within 4Å: Chain B: F.28, N.29, T.76 2 PLIP interactions: 2 interactions with chain B Hydrophobic interactions: B:F.28, B:N.29

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Carafoli, F. et al., Crystal Structures of the Network-Forming Short-Arm Tips of the Laminin Beta1 and Gamma1 Chains. Plos One (2012)

Release Date

2012-08-15

Peptides

LAMININ SUBUNIT GAMMA-1: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

LAMININ SUBUNIT GAMMA-1