SMTL ID : 4ar4.1

Neutron crystallographic structure of the reduced form perdeuterated Pyrococcus furiosus rubredoxin to 1.38 Angstrom resolution.

Coordinates

PDB Format

Method

NEUTRON DIFFRACTION 1.38 Å

Oligo State

monomer

Ligands

1 x FE: FE (III) ION(Non-covalent)

FE.1: 8 residues within 4Å: Chain A: C.6, I.8, C.9, Y.11, C.39, I.41, C.42, A.44 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.6, A:C.9, A:C.39, A:C.42

2 x D8U: deuterium(1+)(Non-covalent)

D8U.2: 5 residues within 4Å: Chain A: M.1, G.27, T.28, K.29, E.32 Protein-ligand interaction information (PLIP) not available D8U.3: 6 residues within 4Å: Chain A: M.1, A.2, K.3, D.14, E.15, D.16 Protein-ligand interaction information (PLIP) not available

4 x D3O: trideuteriooxidanium(Covalent)(Non-covalent)

D3O.4: 5 residues within 4Å: Chain A: A.2, K.3, K.51, L.52, E.53 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:K.3, A:L.52 Water bridges: A:A.2, A:E.53 D3O.5: 4 residues within 4Å: Chain A: S.25, P.26, G.27, T.28 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:S.25, A:P.26 Water bridges: A:T.28 D3O.6: 2 residues within 4Å: Chain A: P.45, S.47 No protein-ligand interaction detected (PLIP) D3O.7: 4 residues within 4Å: Chain A: A.17, G.18, P.20, P.26 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:A.17 Water bridges: A:A.17

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Cuypers, M.G. et al., Near-Atomic Resolution Neutron Crystallography on Perdeuterated Pyrococcus Furiosus Rubredoxin: Implication of Hydronium Ions and Protonation State Equilibria in Redox Changes. Angew.Chem.Int.Ed.Engl. (2013)

Release Date

2013-01-16

Peptides

Rubredoxin: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Rubredoxin

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