- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.05 Å
- Oligo State
- homo-dimer
- Ligands
- 2 x ANP: PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER(Non-covalent)
- 2 x ZN: ZINC ION(Non-covalent)
ZN.2: 4 residues within 4Å:- Chain A: H.325, C.335, C.338, H.351
4 PLIP interactions:4 interactions with chain A- Metal complexes: A:H.325, A:C.335, A:C.338, A:H.351
ZN.10: 4 residues within 4Å:- Chain B: H.325, C.335, C.338, H.351
4 PLIP interactions:4 interactions with chain B- Metal complexes: B:H.325, B:C.335, B:C.338, B:H.351
- 10 x SO4: SULFATE ION(Non-functional Binders)
SO4.3: 5 residues within 4Å:- Chain A: E.23, R.135, N.243, R.246, G.259
6 PLIP interactions:6 interactions with chain A- Hydrogen bonds: A:G.259
- Water bridges: A:E.23, A:R.135, A:G.259
- Salt bridges: A:R.135, A:R.246
SO4.4: 5 residues within 4Å:- Chain A: K.175, R.197, H.201, L.427
- Ligands: SO4.7
5 PLIP interactions:5 interactions with chain A- Water bridges: A:R.197, A:H.201
- Salt bridges: A:K.175, A:R.197, A:H.201
SO4.5: 5 residues within 4Å:- Chain A: N.58, S.59, T.67, S.68
- Chain B: S.68
7 PLIP interactions:5 interactions with chain A, 2 interactions with chain B- Hydrogen bonds: A:N.58, A:S.59, A:S.68, B:S.68, B:S.68
- Water bridges: A:T.67, A:D.69
SO4.6: 4 residues within 4Å:- Chain A: G.103, P.104, K.105, R.308
3 PLIP interactions:3 interactions with chain A- Hydrogen bonds: A:K.105
- Water bridges: A:H.106
- Salt bridges: A:R.308
SO4.7: 6 residues within 4Å:- Chain A: K.173, K.175, K.205, N.243, E.260
- Ligands: SO4.4
7 PLIP interactions:7 interactions with chain A- Hydrogen bonds: A:N.243, A:N.243, A:E.260
- Water bridges: A:K.205
- Salt bridges: A:K.173, A:K.175, A:K.205
SO4.11: 5 residues within 4Å:- Chain B: E.23, R.135, N.243, R.246, G.259
6 PLIP interactions:6 interactions with chain B- Hydrogen bonds: B:G.259
- Water bridges: B:E.23, B:R.135, B:G.259
- Salt bridges: B:R.135, B:R.246
SO4.12: 5 residues within 4Å:- Chain B: K.175, R.197, H.201, L.427
- Ligands: SO4.15
5 PLIP interactions:5 interactions with chain B- Water bridges: B:R.197, B:H.201
- Salt bridges: B:K.175, B:R.197, B:H.201
SO4.13: 5 residues within 4Å:- Chain A: S.68
- Chain B: N.58, S.59, T.67, S.68
7 PLIP interactions:5 interactions with chain B, 2 interactions with chain A- Hydrogen bonds: B:N.58, B:S.59, B:S.68, A:S.68, A:S.68
- Water bridges: B:T.67, B:D.69
SO4.14: 4 residues within 4Å:- Chain B: G.103, P.104, K.105, R.308
3 PLIP interactions:3 interactions with chain B- Hydrogen bonds: B:K.105
- Water bridges: B:H.106
- Salt bridges: B:R.308
SO4.15: 6 residues within 4Å:- Chain B: K.173, K.175, K.205, N.243, E.260
- Ligands: SO4.12
7 PLIP interactions:7 interactions with chain B- Hydrogen bonds: B:N.243, B:N.243, B:E.260
- Water bridges: B:K.205
- Salt bridges: B:K.173, B:K.175, B:K.205
- 2 x CIT: CITRIC ACID(Non-functional Binders)
CIT.8: 8 residues within 4Å:- Chain A: N.152, D.153, H.154, L.156, F.157, S.379, K.407, H.409
14 PLIP interactions:14 interactions with chain A- Hydrophobic interactions: A:K.407
- Hydrogen bonds: A:N.152, A:H.154, A:S.379
- Water bridges: A:D.108, A:N.152, A:H.154, A:S.379
- Salt bridges: A:H.154, A:K.407, A:K.407, A:K.407, A:H.409, A:H.409
CIT.16: 8 residues within 4Å:- Chain B: N.152, D.153, H.154, L.156, F.157, S.379, K.407, H.409
14 PLIP interactions:14 interactions with chain B- Hydrophobic interactions: B:K.407
- Hydrogen bonds: B:N.152, B:H.154, B:S.379
- Water bridges: B:D.108, B:N.152, B:H.154, B:S.379
- Salt bridges: B:H.154, B:K.407, B:K.407, B:K.407, B:H.409, B:H.409
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Banos-Sanz, J.I. et al., Conformational Changes Undergone by Inositol 1,3,4,5,6-Pentakisphosphate 2-Kinase Upon Substrate Binding: The Role of N-Lobe and Enantiomeric Substrate Preference. J.Biol.Chem. (2012)
- Release Date
- 2012-07-04
- Peptides
- INOSITOL-PENTAKISPHOSPHATE 2-KINASE: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
A
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.05 Å
- Oligo State
- homo-dimer
- Ligands
- 2 x ANP: PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER(Non-covalent)
- 2 x ZN: ZINC ION(Non-covalent)
- 10 x SO4: SULFATE ION(Non-functional Binders)
- 2 x CIT: CITRIC ACID(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Banos-Sanz, J.I. et al., Conformational Changes Undergone by Inositol 1,3,4,5,6-Pentakisphosphate 2-Kinase Upon Substrate Binding: The Role of N-Lobe and Enantiomeric Substrate Preference. J.Biol.Chem. (2012)
- Release Date
- 2012-07-04
- Peptides
- INOSITOL-PENTAKISPHOSPHATE 2-KINASE: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
A