SMTL ID : 4ayg.2 (1 other biounit)

Lactobacillus reuteri N-terminally truncated glucansucrase GTF180 in orthorhombic apo-form

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

monomer

Ligands

1 x CA: CALCIUM ION(Non-covalent)

CA.1: 4 residues within 4Å: Chain A: E.240, D.246, N.290, D.769 5 PLIP interactions: 4 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:E.240, A:E.240, A:D.246, A:N.290, H2O.10

22 x GOL: GLYCEROL(Non-functional Binders)

GOL.2: 4 residues within 4Å: Chain A: F.140, S.141, A.144, E.148 Ligand excluded by PLIP GOL.3: 9 residues within 4Å: Chain A: L.242, L.243, D.286, F.717, D.719, Y.726, V.767, Q.770 Ligands: GOL.14 Ligand excluded by PLIP GOL.4: 7 residues within 4Å: Chain A: N.218, S.219, D.220, W.221, N.251, K.855, Y.856 Ligand excluded by PLIP GOL.5: 6 residues within 4Å: Chain A: T.791, W.792, E.793, V.794, S.995, G.997 Ligand excluded by PLIP GOL.6: 3 residues within 4Å: Chain A: S.437, T.438, N.439 Ligand excluded by PLIP GOL.7: 5 residues within 4Å: Chain A: A.591, Y.592, L.599, H.600, L.606 Ligand excluded by PLIP GOL.8: 6 residues within 4Å: Chain A: Y.9, P.12, R.18, K.974, T.979, E.1012 Ligand excluded by PLIP GOL.9: 6 residues within 4Å: Chain A: A.228, T.229, N.230, I.231, D.232, N.235 Ligand excluded by PLIP GOL.10: 2 residues within 4Å: Chain A: Q.364, A.365 Ligand excluded by PLIP GOL.11: 2 residues within 4Å: Chain A: T.586, D.587 Ligand excluded by PLIP GOL.12: 8 residues within 4Å: Chain A: K.49, T.51, W.113, T.116, Q.119, S.146, N.150, Q.892 Ligand excluded by PLIP GOL.13: 4 residues within 4Å: Chain A: R.349, M.353, N.399, P.1026 Ligand excluded by PLIP GOL.14: 9 residues within 4Å: Chain A: L.242, R.284, D.286, A.287, N.290, E.324, W.326, D.397 Ligands: GOL.3 Ligand excluded by PLIP GOL.15: 7 residues within 4Å: Chain A: V.847, K.848, I.849, K.850, E.851, K.855, Y.856 Ligand excluded by PLIP GOL.16: 3 residues within 4Å: Chain A: K.189, H.864 Ligands: SO4.27 Ligand excluded by PLIP GOL.17: 3 residues within 4Å: Chain A: D.220, W.221, L.223 Ligand excluded by PLIP GOL.18: 5 residues within 4Å: Chain A: T.842, I.843, D.844, P.845, S.846 Ligand excluded by PLIP GOL.19: 3 residues within 4Å: Chain A: Y.8, Y.9, I.10 Ligand excluded by PLIP GOL.20: 4 residues within 4Å: Chain A: K.519, R.641, T.642, A.643 Ligand excluded by PLIP GOL.21: 8 residues within 4Å: Chain A: Y.31, K.34, L.43, K.44, Q.46, N.964, T.966 Ligands: ACY.35 Ligand excluded by PLIP GOL.22: 9 residues within 4Å: Chain A: T.227, A.228, T.229, G.237, G.238, D.289, G.327, D.330, G.1031 Ligand excluded by PLIP GOL.23: 1 residues within 4Å: Chain A: N.379 Ligand excluded by PLIP

10 x SO4: SULFATE ION(Non-functional Binders)

SO4.24: 7 residues within 4Å: Chain A: K.49, S.873, Y.879, F.888, P.890, S.891, N.898 8 PLIP interactions: 8 interactions with chain A Hydrogen bonds: A:S.873, A:S.873, A:S.891, A:S.891, A:N.898 Water bridges: A:Y.879, A:Y.879 Salt bridges: A:K.49 SO4.25: 5 residues within 4Å: Chain A: D.875, K.877, Y.912, D.914, E.915 8 PLIP interactions: 8 interactions with chain A Hydrogen bonds: A:D.875, A:D.875, A:Y.912, A:E.915, A:E.915 Water bridges: A:Y.912, A:D.914 Salt bridges: A:K.877 SO4.26: 4 residues within 4Å: Chain A: Y.67, S.894, V.895, Q.896 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:Y.67, A:V.895, A:Q.896 Water bridges: A:S.894 SO4.27: 5 residues within 4Å: Chain A: K.189, V.194, Y.196, H.864 Ligands: GOL.16 3 PLIP interactions: 3 interactions with chain A Water bridges: A:K.189 Salt bridges: A:K.189, A:H.864 SO4.28: 4 residues within 4Å: Chain A: T.791, E.793, K.798, D.985 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:D.985 Water bridges: A:E.793, A:E.793 Salt bridges: A:K.798 SO4.29: 2 residues within 4Å: Chain A: R.533, N.565 2 PLIP interactions: 2 interactions with chain A Water bridges: A:R.533 Salt bridges: A:R.533 SO4.30: 4 residues within 4Å: Chain A: E.680, R.683, P.739, S.744 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:S.744, A:S.744 Salt bridges: A:R.683 SO4.31: 4 residues within 4Å: Chain A: T.229, N.235, Y.236, G.237 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:T.229, A:T.229, A:Y.236, A:G.237 SO4.32: 5 residues within 4Å: Chain A: N.335, N.384, A.385, V.386, I.387 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:N.335, A:N.335 Water bridges: A:N.339, A:N.339 SO4.33: 2 residues within 4Å: Chain A: R.482, P.620 1 PLIP interactions: 1 interactions with chain A Salt bridges: A:R.482

5 x ACY: ACETIC ACID(Non-functional Binders)

ACY.34: 2 residues within 4Å: Chain A: Q.6, Y.8 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:Q.6 ACY.35: 6 residues within 4Å: Chain A: Y.31, D.33, K.34, D.35, K.44 Ligands: GOL.21 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:D.33 Hydrogen bonds: A:K.34, A:D.35 Salt bridges: A:K.44 ACY.36: 2 residues within 4Å: Chain A: T.679, E.680 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:T.679 Hydrogen bonds: A:E.680 ACY.37: 4 residues within 4Å: Chain A: W.84, M.105, T.170, R.174 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:T.170 Water bridges: A:M.105 Salt bridges: A:R.174 ACY.38: 3 residues within 4Å: Chain A: F.924, R.969, D.985 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:F.924 Water bridges: A:R.969, A:R.987 Salt bridges: A:R.969

1 x IPA: ISOPROPYL ALCOHOL(Non-functional Binders)

IPA.39: 2 residues within 4Å: Chain A: P.677, R.683 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:P.677 Hydrogen bonds: A:R.683

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Pijning, T. et al., Flexibility of Truncated and Full-Length Glucansucrase Gtf180 Enzymes from Lactobacillus Reuteri 180. FEBS J. (2014)

Release Date

2013-07-03

Peptides

GLUCANSUCRASE: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

GLUCANSUCRASE

Related Entries With Identical Sequence