SMTL ID : 4ayo.1

Structure of The GH47 processing alpha-1,2-mannosidase from Caulobacter strain K31

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 0.85 Å

Oligo State

monomer

Ligands

2 x CA: CALCIUM ION(Non-covalent)

CA.1: 2 residues within 4Å: Chain A: T.428 Ligands: BTB.4 5 PLIP interactions: 2 interactions with chain A, 3 Ligand-Water interactions Metal complexes: A:T.428, A:T.428, H2O.21, H2O.28, H2O.28 CA.2: 1 residues within 4Å: Chain A: E.230 6 PLIP interactions: 1 interactions with chain A, 5 Ligand-Water interactions Metal complexes: A:E.230, H2O.22, H2O.22, H2O.22, H2O.22, H2O.25

1 x NA: SODIUM ION(Non-functional Binders)

NA.3: 6 residues within 4Å: Chain A: E.61, D.64, S.109, S.403, K.407, N.431 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:E.61, A:S.109, A:K.407 Water bridges: A:E.61

1 x BTB: 2-[BIS-(2-HYDROXY-ETHYL)-AMINO]-2-HYDROXYMETHYL-PROPANE-1,3-DIOL(Non-covalent)

BTB.4: 13 residues within 4Å: Chain A: F.97, E.98, I.101, R.102, L.287, R.340, P.341, E.342, Y.400, E.404, T.428, E.429 Ligands: CA.1 11 PLIP interactions: 11 interactions with chain A Hydrogen bonds: A:E.98, A:R.340, A:E.342, A:E.404 Water bridges: A:R.102, A:D.226, A:S.227, A:R.340 Salt bridges: A:E.342, A:E.404, A:E.429

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Thompson, A.J. et al., The Reaction Coordinate of a Bacterial Gh47 Alpha-Mannosidase: A Combined Quantum Mechanical and Structural Approach. Angew.Chem.Int.Ed.Engl. (2012)

Release Date

2013-01-30

Peptides

MANNOSYL-OLIGOSACCHARIDE 1,2-ALPHA-MANNOSIDASE: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

MANNOSYL-OLIGOSACCHARIDE 1,2-ALPHA-MANNOSIDASE

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