SMTL ID : 4azt.1

Co-crystal structure of WbdD and kinase inhibitor LY294002.

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.34 Å

Oligo State

homo-12-mer

Ligands

12 x SAM: S-ADENOSYLMETHIONINE(Non-covalent)

SAM.1: 18 residues within 4Å: Chain A: Y.29, Q.30, R.49, G.74, A.76, F.80, D.95, F.96, Q.97, N.100, G.121, R.122, I.123, E.124, L.141, S.142, V.143, I.147 16 PLIP interactions: 16 interactions with chain A Hydrophobic interactions: A:Y.29, A:A.76 Hydrogen bonds: A:Q.30, A:G.74, A:A.76, A:F.96, A:Q.97, A:N.100, A:I.123, A:E.124 Water bridges: A:R.122, A:L.141 Salt bridges: A:R.49 pi-Stacking: A:F.96, A:F.96 pi-Cation interactions: A:Y.29 SAM.13: 18 residues within 4Å: Chain B: Y.29, Q.30, R.49, G.74, A.76, F.80, D.95, F.96, Q.97, N.100, G.121, R.122, I.123, E.124, L.141, S.142, V.143, I.147 16 PLIP interactions: 16 interactions with chain B Hydrophobic interactions: B:Y.29, B:A.76 Hydrogen bonds: B:Q.30, B:G.74, B:A.76, B:F.96, B:Q.97, B:N.100, B:I.123, B:E.124 Water bridges: B:R.122, B:L.141 Salt bridges: B:R.49 pi-Stacking: B:F.96, B:F.96 pi-Cation interactions: B:Y.29 SAM.25: 18 residues within 4Å: Chain C: Y.29, Q.30, R.49, G.74, A.76, F.80, D.95, F.96, Q.97, N.100, G.121, R.122, I.123, E.124, L.141, S.142, V.143, I.147 16 PLIP interactions: 16 interactions with chain C Hydrophobic interactions: C:Y.29, C:A.76 Hydrogen bonds: C:Q.30, C:G.74, C:A.76, C:F.96, C:Q.97, C:N.100, C:I.123, C:E.124 Water bridges: C:R.122, C:L.141 Salt bridges: C:R.49 pi-Stacking: C:F.96, C:F.96 pi-Cation interactions: C:Y.29 SAM.37: 18 residues within 4Å: Chain D: Y.29, Q.30, R.49, G.74, A.76, F.80, D.95, F.96, Q.97, N.100, G.121, R.122, I.123, E.124, L.141, S.142, V.143, I.147 16 PLIP interactions: 16 interactions with chain D Hydrophobic interactions: D:Y.29, D:A.76 Hydrogen bonds: D:Q.30, D:G.74, D:A.76, D:F.96, D:Q.97, D:N.100, D:I.123, D:E.124 Water bridges: D:R.122, D:L.141 Salt bridges: D:R.49 pi-Stacking: D:F.96, D:F.96 pi-Cation interactions: D:Y.29 SAM.49: 18 residues within 4Å: Chain E: Y.29, Q.30, R.49, G.74, A.76, F.80, D.95, F.96, Q.97, N.100, G.121, R.122, I.123, E.124, L.141, S.142, V.143, I.147 16 PLIP interactions: 16 interactions with chain E Hydrophobic interactions: E:Y.29, E:A.76 Hydrogen bonds: E:Q.30, E:G.74, E:A.76, E:F.96, E:Q.97, E:N.100, E:I.123, E:E.124 Water bridges: E:R.122, E:L.141 Salt bridges: E:R.49 pi-Stacking: E:F.96, E:F.96 pi-Cation interactions: E:Y.29 SAM.61: 18 residues within 4Å: Chain F: Y.29, Q.30, R.49, G.74, A.76, F.80, D.95, F.96, Q.97, N.100, G.121, R.122, I.123, E.124, L.141, S.142, V.143, I.147 16 PLIP interactions: 16 interactions with chain F Hydrophobic interactions: F:Y.29, F:A.76 Hydrogen bonds: F:Q.30, F:G.74, F:A.76, F:F.96, F:Q.97, F:N.100, F:I.123, F:E.124 Water bridges: F:R.122, F:L.141 Salt bridges: F:R.49 pi-Stacking: F:F.96, F:F.96 pi-Cation interactions: F:Y.29 SAM.73: 18 residues within 4Å: Chain G: Y.29, Q.30, R.49, G.74, A.76, F.80, D.95, F.96, Q.97, N.100, G.121, R.122, I.123, E.124, L.141, S.142, V.143, I.147 16 PLIP interactions: 16 interactions with chain G Hydrophobic interactions: G:Y.29, G:A.76 Hydrogen bonds: G:Q.30, G:G.74, G:A.76, G:F.96, G:Q.97, G:N.100, G:I.123, G:E.124 Water bridges: G:R.122, G:L.141 Salt bridges: G:R.49 pi-Stacking: G:F.96, G:F.96 pi-Cation interactions: G:Y.29 SAM.85: 18 residues within 4Å: Chain H: Y.29, Q.30, R.49, G.74, A.76, F.80, D.95, F.96, Q.97, N.100, G.121, R.122, I.123, E.124, L.141, S.142, V.143, I.147 16 PLIP interactions: 16 interactions with chain H Hydrophobic interactions: H:Y.29, H:A.76 Hydrogen bonds: H:Q.30, H:G.74, H:A.76, H:F.96, H:Q.97, H:N.100, H:I.123, H:E.124 Water bridges: H:R.122, H:L.141 Salt bridges: H:R.49 pi-Stacking: H:F.96, H:F.96 pi-Cation interactions: H:Y.29 SAM.97: 18 residues within 4Å: Chain I: Y.29, Q.30, R.49, G.74, A.76, F.80, D.95, F.96, Q.97, N.100, G.121, R.122, I.123, E.124, L.141, S.142, V.143, I.147 16 PLIP interactions: 16 interactions with chain I Hydrophobic interactions: I:Y.29, I:A.76 Hydrogen bonds: I:Q.30, I:G.74, I:A.76, I:F.96, I:Q.97, I:N.100, I:I.123, I:E.124 Water bridges: I:R.122, I:L.141 Salt bridges: I:R.49 pi-Stacking: I:F.96, I:F.96 pi-Cation interactions: I:Y.29 SAM.109: 18 residues within 4Å: Chain J: Y.29, Q.30, R.49, G.74, A.76, F.80, D.95, F.96, Q.97, N.100, G.121, R.122, I.123, E.124, L.141, S.142, V.143, I.147 16 PLIP interactions: 16 interactions with chain J Hydrophobic interactions: J:Y.29, J:A.76 Hydrogen bonds: J:Q.30, J:G.74, J:A.76, J:F.96, J:Q.97, J:N.100, J:I.123, J:E.124 Water bridges: J:R.122, J:L.141 Salt bridges: J:R.49 pi-Stacking: J:F.96, J:F.96 pi-Cation interactions: J:Y.29 SAM.121: 18 residues within 4Å: Chain K: Y.29, Q.30, R.49, G.74, A.76, F.80, D.95, F.96, Q.97, N.100, G.121, R.122, I.123, E.124, L.141, S.142, V.143, I.147 16 PLIP interactions: 16 interactions with chain K Hydrophobic interactions: K:Y.29, K:A.76 Hydrogen bonds: K:Q.30, K:G.74, K:A.76, K:F.96, K:Q.97, K:N.100, K:I.123, K:E.124 Water bridges: K:R.122, K:L.141 Salt bridges: K:R.49 pi-Stacking: K:F.96, K:F.96 pi-Cation interactions: K:Y.29 SAM.133: 18 residues within 4Å: Chain L: Y.29, Q.30, R.49, G.74, A.76, F.80, D.95, F.96, Q.97, N.100, G.121, R.122, I.123, E.124, L.141, S.142, V.143, I.147 16 PLIP interactions: 16 interactions with chain L Hydrophobic interactions: L:Y.29, L:A.76 Hydrogen bonds: L:Q.30, L:G.74, L:A.76, L:F.96, L:Q.97, L:N.100, L:I.123, L:E.124 Water bridges: L:R.122, L:L.141 Salt bridges: L:R.49 pi-Stacking: L:F.96, L:F.96 pi-Cation interactions: L:Y.29

96 x SO4: SULFATE ION(Non-functional Binders)

SO4.2: 8 residues within 4Å: Chain A: R.44, D.45, C.46, N.47, Q.48, R.49, F.207, D.208 Ligand excluded by PLIP SO4.3: 5 residues within 4Å: Chain A: I.339, D.340, R.341, E.342, W.435 Ligand excluded by PLIP SO4.4: 4 residues within 4Å: Chain A: R.105, F.118, R.119, V.120 Ligand excluded by PLIP SO4.5: 1 residues within 4Å: Chain A: R.66 Ligand excluded by PLIP SO4.6: 2 residues within 4Å: Chain A: N.313, A.314 Ligand excluded by PLIP SO4.7: 4 residues within 4Å: Chain A: R.105, E.117, F.118, R.119 Ligand excluded by PLIP SO4.8: 3 residues within 4Å: Chain A: S.347, R.350, H.377 Ligand excluded by PLIP SO4.9: 2 residues within 4Å: Chain A: P.432, Q.433 Ligand excluded by PLIP SO4.14: 8 residues within 4Å: Chain B: R.44, D.45, C.46, N.47, Q.48, R.49, F.207, D.208 Ligand excluded by PLIP SO4.15: 5 residues within 4Å: Chain B: I.339, D.340, R.341, E.342, W.435 Ligand excluded by PLIP SO4.16: 4 residues within 4Å: Chain B: R.105, F.118, R.119, V.120 Ligand excluded by PLIP SO4.17: 1 residues within 4Å: Chain B: R.66 Ligand excluded by PLIP SO4.18: 2 residues within 4Å: Chain B: N.313, A.314 Ligand excluded by PLIP SO4.19: 4 residues within 4Å: Chain B: R.105, E.117, F.118, R.119 Ligand excluded by PLIP SO4.20: 3 residues within 4Å: Chain B: S.347, R.350, H.377 Ligand excluded by PLIP SO4.21: 2 residues within 4Å: Chain B: P.432, Q.433 Ligand excluded by PLIP SO4.26: 8 residues within 4Å: Chain C: R.44, D.45, C.46, N.47, Q.48, R.49, F.207, D.208 Ligand excluded by PLIP SO4.27: 5 residues within 4Å: Chain C: I.339, D.340, R.341, E.342, W.435 Ligand excluded by PLIP SO4.28: 4 residues within 4Å: Chain C: R.105, F.118, R.119, V.120 Ligand excluded by PLIP SO4.29: 1 residues within 4Å: Chain C: R.66 Ligand excluded by PLIP SO4.30: 2 residues within 4Å: Chain C: N.313, A.314 Ligand excluded by PLIP SO4.31: 4 residues within 4Å: Chain C: R.105, E.117, F.118, R.119 Ligand excluded by PLIP SO4.32: 3 residues within 4Å: Chain C: S.347, R.350, H.377 Ligand excluded by PLIP SO4.33: 2 residues within 4Å: Chain C: P.432, Q.433 Ligand excluded by PLIP SO4.38: 8 residues within 4Å: Chain D: R.44, D.45, C.46, N.47, Q.48, R.49, F.207, D.208 Ligand excluded by PLIP SO4.39: 5 residues within 4Å: Chain D: I.339, D.340, R.341, E.342, W.435 Ligand excluded by PLIP SO4.40: 4 residues within 4Å: Chain D: R.105, F.118, R.119, V.120 Ligand excluded by PLIP SO4.41: 1 residues within 4Å: Chain D: R.66 Ligand excluded by PLIP SO4.42: 2 residues within 4Å: Chain D: N.313, A.314 Ligand excluded by PLIP SO4.43: 4 residues within 4Å: Chain D: R.105, E.117, F.118, R.119 Ligand excluded by PLIP SO4.44: 3 residues within 4Å: Chain D: S.347, R.350, H.377 Ligand excluded by PLIP SO4.45: 2 residues within 4Å: Chain D: P.432, Q.433 Ligand excluded by PLIP SO4.50: 8 residues within 4Å: Chain E: R.44, D.45, C.46, N.47, Q.48, R.49, F.207, D.208 Ligand excluded by PLIP SO4.51: 5 residues within 4Å: Chain E: I.339, D.340, R.341, E.342, W.435 Ligand excluded by PLIP SO4.52: 4 residues within 4Å: Chain E: R.105, F.118, R.119, V.120 Ligand excluded by PLIP SO4.53: 1 residues within 4Å: Chain E: R.66 Ligand excluded by PLIP SO4.54: 2 residues within 4Å: Chain E: N.313, A.314 Ligand excluded by PLIP SO4.55: 4 residues within 4Å: Chain E: R.105, E.117, F.118, R.119 Ligand excluded by PLIP SO4.56: 3 residues within 4Å: Chain E: S.347, R.350, H.377 Ligand excluded by PLIP SO4.57: 2 residues within 4Å: Chain E: P.432, Q.433 Ligand excluded by PLIP SO4.62: 8 residues within 4Å: Chain F: R.44, D.45, C.46, N.47, Q.48, R.49, F.207, D.208 Ligand excluded by PLIP SO4.63: 5 residues within 4Å: Chain F: I.339, D.340, R.341, E.342, W.435 Ligand excluded by PLIP SO4.64: 4 residues within 4Å: Chain F: R.105, F.118, R.119, V.120 Ligand excluded by PLIP SO4.65: 1 residues within 4Å: Chain F: R.66 Ligand excluded by PLIP SO4.66: 2 residues within 4Å: Chain F: N.313, A.314 Ligand excluded by PLIP SO4.67: 4 residues within 4Å: Chain F: R.105, E.117, F.118, R.119 Ligand excluded by PLIP SO4.68: 3 residues within 4Å: Chain F: S.347, R.350, H.377 Ligand excluded by PLIP SO4.69: 2 residues within 4Å: Chain F: P.432, Q.433 Ligand excluded by PLIP SO4.74: 8 residues within 4Å: Chain G: R.44, D.45, C.46, N.47, Q.48, R.49, F.207, D.208 Ligand excluded by PLIP SO4.75: 5 residues within 4Å: Chain G: I.339, D.340, R.341, E.342, W.435 Ligand excluded by PLIP SO4.76: 4 residues within 4Å: Chain G: R.105, F.118, R.119, V.120 Ligand excluded by PLIP SO4.77: 1 residues within 4Å: Chain G: R.66 Ligand excluded by PLIP SO4.78: 2 residues within 4Å: Chain G: N.313, A.314 Ligand excluded by PLIP SO4.79: 4 residues within 4Å: Chain G: R.105, E.117, F.118, R.119 Ligand excluded by PLIP SO4.80: 3 residues within 4Å: Chain G: S.347, R.350, H.377 Ligand excluded by PLIP SO4.81: 2 residues within 4Å: Chain G: P.432, Q.433 Ligand excluded by PLIP SO4.86: 8 residues within 4Å: Chain H: R.44, D.45, C.46, N.47, Q.48, R.49, F.207, D.208 Ligand excluded by PLIP SO4.87: 5 residues within 4Å: Chain H: I.339, D.340, R.341, E.342, W.435 Ligand excluded by PLIP SO4.88: 4 residues within 4Å: Chain H: R.105, F.118, R.119, V.120 Ligand excluded by PLIP SO4.89: 1 residues within 4Å: Chain H: R.66 Ligand excluded by PLIP SO4.90: 2 residues within 4Å: Chain H: N.313, A.314 Ligand excluded by PLIP SO4.91: 4 residues within 4Å: Chain H: R.105, E.117, F.118, R.119 Ligand excluded by PLIP SO4.92: 3 residues within 4Å: Chain H: S.347, R.350, H.377 Ligand excluded by PLIP SO4.93: 2 residues within 4Å: Chain H: P.432, Q.433 Ligand excluded by PLIP SO4.98: 8 residues within 4Å: Chain I: R.44, D.45, C.46, N.47, Q.48, R.49, F.207, D.208 Ligand excluded by PLIP SO4.99: 5 residues within 4Å: Chain I: I.339, D.340, R.341, E.342, W.435 Ligand excluded by PLIP SO4.100: 4 residues within 4Å: Chain I: R.105, F.118, R.119, V.120 Ligand excluded by PLIP SO4.101: 1 residues within 4Å: Chain I: R.66 Ligand excluded by PLIP SO4.102: 2 residues within 4Å: Chain I: N.313, A.314 Ligand excluded by PLIP SO4.103: 4 residues within 4Å: Chain I: R.105, E.117, F.118, R.119 Ligand excluded by PLIP SO4.104: 3 residues within 4Å: Chain I: S.347, R.350, H.377 Ligand excluded by PLIP SO4.105: 2 residues within 4Å: Chain I: P.432, Q.433 Ligand excluded by PLIP SO4.110: 8 residues within 4Å: Chain J: R.44, D.45, C.46, N.47, Q.48, R.49, F.207, D.208 Ligand excluded by PLIP SO4.111: 5 residues within 4Å: Chain J: I.339, D.340, R.341, E.342, W.435 Ligand excluded by PLIP SO4.112: 4 residues within 4Å: Chain J: R.105, F.118, R.119, V.120 Ligand excluded by PLIP SO4.113: 1 residues within 4Å: Chain J: R.66 Ligand excluded by PLIP SO4.114: 2 residues within 4Å: Chain J: N.313, A.314 Ligand excluded by PLIP SO4.115: 4 residues within 4Å: Chain J: R.105, E.117, F.118, R.119 Ligand excluded by PLIP SO4.116: 3 residues within 4Å: Chain J: S.347, R.350, H.377 Ligand excluded by PLIP SO4.117: 2 residues within 4Å: Chain J: P.432, Q.433 Ligand excluded by PLIP SO4.122: 8 residues within 4Å: Chain K: R.44, D.45, C.46, N.47, Q.48, R.49, F.207, D.208 Ligand excluded by PLIP SO4.123: 5 residues within 4Å: Chain K: I.339, D.340, R.341, E.342, W.435 Ligand excluded by PLIP SO4.124: 4 residues within 4Å: Chain K: R.105, F.118, R.119, V.120 Ligand excluded by PLIP SO4.125: 1 residues within 4Å: Chain K: R.66 Ligand excluded by PLIP SO4.126: 2 residues within 4Å: Chain K: N.313, A.314 Ligand excluded by PLIP SO4.127: 4 residues within 4Å: Chain K: R.105, E.117, F.118, R.119 Ligand excluded by PLIP SO4.128: 3 residues within 4Å: Chain K: S.347, R.350, H.377 Ligand excluded by PLIP SO4.129: 2 residues within 4Å: Chain K: P.432, Q.433 Ligand excluded by PLIP SO4.134: 8 residues within 4Å: Chain L: R.44, D.45, C.46, N.47, Q.48, R.49, F.207, D.208 Ligand excluded by PLIP SO4.135: 5 residues within 4Å: Chain L: I.339, D.340, R.341, E.342, W.435 Ligand excluded by PLIP SO4.136: 4 residues within 4Å: Chain L: R.105, F.118, R.119, V.120 Ligand excluded by PLIP SO4.137: 1 residues within 4Å: Chain L: R.66 Ligand excluded by PLIP SO4.138: 2 residues within 4Å: Chain L: N.313, A.314 Ligand excluded by PLIP SO4.139: 4 residues within 4Å: Chain L: R.105, E.117, F.118, R.119 Ligand excluded by PLIP SO4.140: 3 residues within 4Å: Chain L: S.347, R.350, H.377 Ligand excluded by PLIP SO4.141: 2 residues within 4Å: Chain L: P.432, Q.433 Ligand excluded by PLIP

24 x CL: CHLORIDE ION(Non-functional Binders)

CL.10: 7 residues within 4Å: Chain A: S.142, V.143, F.144, H.145, E.173, L.174, A.175 Ligand excluded by PLIP CL.11: 7 residues within 4Å: Chain A: F.181, Y.182 Chain B: Y.182 Chain J: F.181, Y.182 Ligands: CL.23, CL.119 Ligand excluded by PLIP CL.22: 7 residues within 4Å: Chain B: S.142, V.143, F.144, H.145, E.173, L.174, A.175 Ligand excluded by PLIP CL.23: 7 residues within 4Å: Chain A: F.181, Y.182 Chain B: F.181, Y.182 Chain J: Y.182 Ligands: CL.11, CL.119 Ligand excluded by PLIP CL.34: 7 residues within 4Å: Chain C: S.142, V.143, F.144, H.145, E.173, L.174, A.175 Ligand excluded by PLIP CL.35: 7 residues within 4Å: Chain C: F.181, Y.182 Chain F: Y.182 Chain I: F.181, Y.182 Ligands: CL.71, CL.107 Ligand excluded by PLIP CL.46: 7 residues within 4Å: Chain D: S.142, V.143, F.144, H.145, E.173, L.174, A.175 Ligand excluded by PLIP CL.47: 7 residues within 4Å: Chain D: F.181, Y.182 Chain E: F.181, Y.182 Chain K: Y.182 Ligands: CL.59, CL.131 Ligand excluded by PLIP CL.58: 7 residues within 4Å: Chain E: S.142, V.143, F.144, H.145, E.173, L.174, A.175 Ligand excluded by PLIP CL.59: 7 residues within 4Å: Chain D: Y.182 Chain E: F.181, Y.182 Chain K: F.181, Y.182 Ligands: CL.47, CL.131 Ligand excluded by PLIP CL.70: 7 residues within 4Å: Chain F: S.142, V.143, F.144, H.145, E.173, L.174, A.175 Ligand excluded by PLIP CL.71: 7 residues within 4Å: Chain C: F.181, Y.182 Chain F: F.181, Y.182 Chain I: Y.182 Ligands: CL.35, CL.107 Ligand excluded by PLIP CL.82: 7 residues within 4Å: Chain G: S.142, V.143, F.144, H.145, E.173, L.174, A.175 Ligand excluded by PLIP CL.83: 7 residues within 4Å: Chain G: F.181, Y.182 Chain H: F.181, Y.182 Chain L: Y.182 Ligands: CL.95, CL.143 Ligand excluded by PLIP CL.94: 7 residues within 4Å: Chain H: S.142, V.143, F.144, H.145, E.173, L.174, A.175 Ligand excluded by PLIP CL.95: 7 residues within 4Å: Chain G: Y.182 Chain H: F.181, Y.182 Chain L: F.181, Y.182 Ligands: CL.83, CL.143 Ligand excluded by PLIP CL.106: 7 residues within 4Å: Chain I: S.142, V.143, F.144, H.145, E.173, L.174, A.175 Ligand excluded by PLIP CL.107: 7 residues within 4Å: Chain C: Y.182 Chain F: F.181, Y.182 Chain I: F.181, Y.182 Ligands: CL.35, CL.71 Ligand excluded by PLIP CL.118: 7 residues within 4Å: Chain J: S.142, V.143, F.144, H.145, E.173, L.174, A.175 Ligand excluded by PLIP CL.119: 7 residues within 4Å: Chain A: Y.182 Chain B: F.181, Y.182 Chain J: F.181, Y.182 Ligands: CL.11, CL.23 Ligand excluded by PLIP CL.130: 7 residues within 4Å: Chain K: S.142, V.143, F.144, H.145, E.173, L.174, A.175 Ligand excluded by PLIP CL.131: 7 residues within 4Å: Chain D: F.181, Y.182 Chain E: Y.182 Chain K: F.181, Y.182 Ligands: CL.47, CL.59 Ligand excluded by PLIP CL.142: 7 residues within 4Å: Chain L: S.142, V.143, F.144, H.145, E.173, L.174, A.175 Ligand excluded by PLIP CL.143: 7 residues within 4Å: Chain G: F.181, Y.182 Chain H: Y.182 Chain L: F.181, Y.182 Ligands: CL.83, CL.95 Ligand excluded by PLIP

12 x LY2: 2-MORPHOLIN-4-YL-7-PHENYL-4H-CHROMEN-4-ONE(Non-covalent)

LY2.12: 10 residues within 4Å: Chain A: H.237, Q.239, Y.256, F.258, V.263, K.323, L.324, L.328, M.371, I.381 7 PLIP interactions: 7 interactions with chain A Hydrophobic interactions: A:Y.256, A:V.263, A:L.328, A:I.381 Hydrogen bonds: A:L.324 pi-Stacking: A:Y.256, A:F.258 LY2.24: 10 residues within 4Å: Chain B: H.237, Q.239, Y.256, F.258, V.263, K.323, L.324, L.328, M.371, I.381 7 PLIP interactions: 7 interactions with chain B Hydrophobic interactions: B:Y.256, B:V.263, B:L.328, B:I.381 Hydrogen bonds: B:L.324 pi-Stacking: B:Y.256, B:F.258 LY2.36: 10 residues within 4Å: Chain C: H.237, Q.239, Y.256, F.258, V.263, K.323, L.324, L.328, M.371, I.381 7 PLIP interactions: 7 interactions with chain C Hydrophobic interactions: C:Y.256, C:V.263, C:L.328, C:I.381 Hydrogen bonds: C:L.324 pi-Stacking: C:Y.256, C:F.258 LY2.48: 10 residues within 4Å: Chain D: H.237, Q.239, Y.256, F.258, V.263, K.323, L.324, L.328, M.371, I.381 7 PLIP interactions: 7 interactions with chain D Hydrophobic interactions: D:Y.256, D:V.263, D:L.328, D:I.381 Hydrogen bonds: D:L.324 pi-Stacking: D:Y.256, D:F.258 LY2.60: 10 residues within 4Å: Chain E: H.237, Q.239, Y.256, F.258, V.263, K.323, L.324, L.328, M.371, I.381 7 PLIP interactions: 7 interactions with chain E Hydrophobic interactions: E:Y.256, E:V.263, E:L.328, E:I.381 Hydrogen bonds: E:L.324 pi-Stacking: E:Y.256, E:F.258 LY2.72: 10 residues within 4Å: Chain F: H.237, Q.239, Y.256, F.258, V.263, K.323, L.324, L.328, M.371, I.381 7 PLIP interactions: 7 interactions with chain F Hydrophobic interactions: F:Y.256, F:V.263, F:L.328, F:I.381 Hydrogen bonds: F:L.324 pi-Stacking: F:Y.256, F:F.258 LY2.84: 10 residues within 4Å: Chain G: H.237, Q.239, Y.256, F.258, V.263, K.323, L.324, L.328, M.371, I.381 7 PLIP interactions: 7 interactions with chain G Hydrophobic interactions: G:Y.256, G:V.263, G:L.328, G:I.381 Hydrogen bonds: G:L.324 pi-Stacking: G:Y.256, G:F.258 LY2.96: 10 residues within 4Å: Chain H: H.237, Q.239, Y.256, F.258, V.263, K.323, L.324, L.328, M.371, I.381 7 PLIP interactions: 7 interactions with chain H Hydrophobic interactions: H:Y.256, H:V.263, H:L.328, H:I.381 Hydrogen bonds: H:L.324 pi-Stacking: H:Y.256, H:F.258 LY2.108: 10 residues within 4Å: Chain I: H.237, Q.239, Y.256, F.258, V.263, K.323, L.324, L.328, M.371, I.381 7 PLIP interactions: 7 interactions with chain I Hydrophobic interactions: I:Y.256, I:V.263, I:L.328, I:I.381 Hydrogen bonds: I:L.324 pi-Stacking: I:Y.256, I:F.258 LY2.120: 10 residues within 4Å: Chain J: H.237, Q.239, Y.256, F.258, V.263, K.323, L.324, L.328, M.371, I.381 7 PLIP interactions: 7 interactions with chain J Hydrophobic interactions: J:Y.256, J:V.263, J:L.328, J:I.381 Hydrogen bonds: J:L.324 pi-Stacking: J:Y.256, J:F.258 LY2.132: 10 residues within 4Å: Chain K: H.237, Q.239, Y.256, F.258, V.263, K.323, L.324, L.328, M.371, I.381 7 PLIP interactions: 7 interactions with chain K Hydrophobic interactions: K:Y.256, K:V.263, K:L.328, K:I.381 Hydrogen bonds: K:L.324 pi-Stacking: K:Y.256, K:F.258 LY2.144: 10 residues within 4Å: Chain L: H.237, Q.239, Y.256, F.258, V.263, K.323, L.324, L.328, M.371, I.381 7 PLIP interactions: 7 interactions with chain L Hydrophobic interactions: L:Y.256, L:V.263, L:L.328, L:I.381 Hydrogen bonds: L:L.324 pi-Stacking: L:Y.256, L:F.258

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Hagelueken, G. et al., Structure of Wbdd; a Bifunctional Kinase and Methyltransferase that Regulates the Chain Length of the O Antigen in Escherichia Coli O9A. Mol.Microbiol. (2012)

Release Date

2012-09-26

Peptides

METHYLTRANSFERASE WBDD: ABCDEFGHIJKL

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

C
A

D
A

E
A

F
A

G
A

H
A

I
A

J
A

K
A

L
A

METHYLTRANSFERASE WBDD

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