SMTL ID : 4b96.1

Family 3b carbohydrate-binding module from the biomass sensoring system of Clostridium clariflavum

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.91 Å

Oligo State

homo-dimer

Ligands

6 x CL: CHLORIDE ION(Non-functional Binders)

CL.1: 3 residues within 4Å: Chain A: K.135 Chain B: H.2, M.3 Ligand excluded by PLIP CL.2: 2 residues within 4Å: Chain A: S.131, Y.132 Ligand excluded by PLIP CL.3: 5 residues within 4Å: Chain A: K.143, L.144 Chain B: E.149, P.150, Y.151 Ligand excluded by PLIP CL.5: 3 residues within 4Å: Chain A: H.2, M.3 Chain B: K.135 Ligand excluded by PLIP CL.6: 2 residues within 4Å: Chain B: S.131, Y.132 Ligand excluded by PLIP CL.7: 5 residues within 4Å: Chain A: E.149, P.150, Y.151 Chain B: K.143, L.144 Ligand excluded by PLIP

2 x CA: CALCIUM ION(Non-covalent)

CA.4: 4 residues within 4Å: Chain A: K.47, N.116, D.119, D.120 5 PLIP interactions: 3 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:K.47, A:N.116, A:D.120, H2O.3, H2O.3 CA.8: 4 residues within 4Å: Chain B: K.47, N.116, D.119, D.120 5 PLIP interactions: 3 interactions with chain B, 2 Ligand-Water interactions Metal complexes: B:K.47, B:N.116, B:D.120, H2O.10, H2O.10

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Yaniv, O. et al., Structure of Cbm3B from the Biomass Sensoring System of Clostridium Clarifalvum. To be Published

Release Date

2013-09-18

Peptides

CELLULOSE BINDING DOMAIN-CONTAINING PROTEIN: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

CELLULOSE BINDING DOMAIN-CONTAINING PROTEIN