- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.85 Å
- Oligo State
- homo-tetramer
- Ligands
- 2 x ZN: ZINC ION(Non-covalent)
- 6 x SO4: SULFATE ION(Non-functional Binders)
SO4.2: 3 residues within 4Å:- Chain A: H.341, K.342, H.360
4 PLIP interactions:4 interactions with chain A- Hydrogen bonds: A:K.342
- Salt bridges: A:H.341, A:K.342, A:H.360
SO4.9: 6 residues within 4Å:- Chain A: D.188, Q.189, G.190, P.214, Y.215
- Ligands: 19C.8
5 PLIP interactions:5 interactions with chain A- Hydrogen bonds: A:D.188, A:Q.189, A:Y.215
- Water bridges: A:Y.215, A:H.216
SO4.11: 5 residues within 4Å:- Chain B: K.222, R.225, S.261, P.262, V.263
4 PLIP interactions:4 interactions with chain B- Hydrogen bonds: B:S.261, B:V.263
- Salt bridges: B:K.222, B:R.225
SO4.14: 3 residues within 4Å:- Chain E: H.341, K.342, H.360
4 PLIP interactions:4 interactions with chain E- Hydrogen bonds: E:K.342
- Salt bridges: E:H.341, E:K.342, E:H.360
SO4.21: 6 residues within 4Å:- Chain E: D.188, Q.189, G.190, P.214, Y.215
- Ligands: 19C.20
4 PLIP interactions:4 interactions with chain E- Hydrogen bonds: E:D.188, E:Q.189, E:Y.215
- Water bridges: E:H.216
SO4.23: 5 residues within 4Å:- Chain F: K.222, R.225, S.261, P.262, V.263
4 PLIP interactions:4 interactions with chain F- Hydrogen bonds: F:S.261, F:V.263
- Salt bridges: F:K.222, F:R.225
- 10 x GOL: GLYCEROL(Non-functional Binders)
GOL.3: 3 residues within 4Å:- Chain A: S.165, T.166, S.167
3 PLIP interactions:3 interactions with chain A- Hydrogen bonds: A:T.166, A:T.166, A:S.167
GOL.4: 3 residues within 4Å:- Chain A: S.139, Q.140, K.244
1 PLIP interactions:1 interactions with chain A- Hydrogen bonds: A:Q.140
GOL.5: 4 residues within 4Å:- Chain A: Q.63, Y.83
- Chain E: P.280, F.281
3 PLIP interactions:1 interactions with chain A, 2 interactions with chain E- Hydrogen bonds: A:Q.63, E:F.281
- Water bridges: E:T.279
GOL.10: 3 residues within 4Å:- Chain A: P.118, D.119
- Chain C: T.3
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:D.119, A:D.119
GOL.12: 6 residues within 4Å:- Chain A: L.295, Q.299
- Chain B: Y.266, Q.270, G.274, D.276
2 PLIP interactions:1 interactions with chain B, 1 interactions with chain A- Hydrogen bonds: B:D.276, A:Q.299
GOL.15: 3 residues within 4Å:- Chain E: S.165, T.166, S.167
2 PLIP interactions:2 interactions with chain E- Hydrogen bonds: E:T.166, E:S.167
GOL.16: 3 residues within 4Å:- Chain E: S.139, Q.140, K.244
1 PLIP interactions:1 interactions with chain E- Hydrogen bonds: E:Q.140
GOL.17: 4 residues within 4Å:- Chain A: P.280, F.281
- Chain E: Q.63, Y.83
4 PLIP interactions:2 interactions with chain E, 2 interactions with chain A- Hydrogen bonds: E:Q.63, E:Y.83, A:F.281
- Water bridges: A:T.279
GOL.22: 3 residues within 4Å:- Chain E: P.118, D.119
- Chain G: T.3
2 PLIP interactions:2 interactions with chain E- Hydrogen bonds: E:D.119, E:D.119
GOL.24: 6 residues within 4Å:- Chain E: L.295, Q.299
- Chain F: Y.266, Q.270, G.274, D.276
2 PLIP interactions:1 interactions with chain F, 1 interactions with chain E- Hydrogen bonds: F:D.276, E:Q.299
- 4 x MG: MAGNESIUM ION(Non-covalent)
MG.6: 4 residues within 4Å:- Chain A: D.131, D.188
- Ligands: MG.7, 19C.8
3 PLIP interactions:2 interactions with chain A, 1 Ligand-Water interactions- Metal complexes: A:D.131, A:D.188, H2O.2
MG.7: 5 residues within 4Å:- Chain A: D.131, E.224, N.227
- Ligands: MG.6, 19C.8
4 PLIP interactions:3 interactions with chain A, 1 Ligand-Water interactions- Metal complexes: A:D.131, A:E.224, A:E.224, H2O.2
MG.18: 4 residues within 4Å:- Chain E: D.131, D.188
- Ligands: MG.19, 19C.20
3 PLIP interactions:2 interactions with chain E, 1 Ligand-Water interactions- Metal complexes: E:D.131, E:D.188, H2O.11
MG.19: 5 residues within 4Å:- Chain E: D.131, E.224, N.227
- Ligands: MG.18, 19C.20
4 PLIP interactions:3 interactions with chain E, 1 Ligand-Water interactions- Metal complexes: E:D.131, E:E.224, E:E.224, H2O.11
- 2 x 19C: 2-[(3-chloranyl-4-fluoranyl-phenyl)methyl]-6,7-bis(oxidanyl)isoindol-1-one(Non-covalent)
19C.8: 11 residues within 4Å:- Chain A: D.131, D.188, P.217, Q.218, E.224
- Chain C: G.4
- Chain D: C.16, A.17
- Ligands: MG.6, MG.7, SO4.9
2 PLIP interactions:2 interactions with chain A- Hydrophobic interactions: A:P.217
- Water bridges: A:N.227
19C.20: 11 residues within 4Å:- Chain E: D.131, D.188, P.217, Q.218, E.224
- Chain G: G.4
- Chain H: C.16, A.17
- Ligands: MG.18, MG.19, SO4.21
2 PLIP interactions:2 interactions with chain E- Hydrophobic interactions: E:P.217
- Water bridges: E:N.227
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Metifiot, M. et al., Activities, Crystal Structures and Molecular Dynamics of Dihydro-1H-Isoindole Derivatives, Inhibitors of HIV-1 Integrase. Acs Chem.Biol. (2013)
- Release Date
- 2012-10-31
- Peptides
- PFV INTEGRASE: ABEF
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BE
AF
B
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.85 Å
- Oligo State
- homo-tetramer
- Ligands
- 2 x ZN: ZINC ION(Non-covalent)
- 6 x SO4: SULFATE ION(Non-functional Binders)
- 10 x GOL: GLYCEROL(Non-functional Binders)
- 4 x MG: MAGNESIUM ION(Non-covalent)
- 2 x 19C: 2-[(3-chloranyl-4-fluoranyl-phenyl)methyl]-6,7-bis(oxidanyl)isoindol-1-one(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Metifiot, M. et al., Activities, Crystal Structures and Molecular Dynamics of Dihydro-1H-Isoindole Derivatives, Inhibitors of HIV-1 Integrase. Acs Chem.Biol. (2013)
- Release Date
- 2012-10-31
- Peptides
- PFV INTEGRASE: ABEF
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BE
AF
B