- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.38 Å
- Oligo State
- homo-tetramer
- Ligands
- 2 x ZN: ZINC ION(Non-covalent)
- 6 x SO4: SULFATE ION(Non-functional Binders)
SO4.2: 3 residues within 4Å:- Chain A: H.341, K.342, H.360
4 PLIP interactions:4 interactions with chain A- Hydrogen bonds: A:K.342
- Salt bridges: A:H.341, A:K.342, A:H.360
SO4.8: 6 residues within 4Å:- Chain A: D.188, Q.189, G.190, P.214, Y.215
- Ligands: XZ2.13
4 PLIP interactions:4 interactions with chain A- Hydrogen bonds: A:Q.189, A:Y.215
- Water bridges: A:T.213, A:H.216
SO4.10: 5 residues within 4Å:- Chain B: K.222, R.225, S.261, P.262, V.263
4 PLIP interactions:4 interactions with chain B- Hydrogen bonds: B:S.261, B:V.263
- Salt bridges: B:K.222, B:R.225
SO4.15: 3 residues within 4Å:- Chain E: H.341, K.342, H.360
4 PLIP interactions:4 interactions with chain E- Hydrogen bonds: E:K.342
- Salt bridges: E:H.341, E:K.342, E:H.360
SO4.21: 6 residues within 4Å:- Chain E: D.188, Q.189, G.190, P.214, Y.215
- Ligands: XZ2.26
4 PLIP interactions:4 interactions with chain E- Hydrogen bonds: E:Q.189, E:Y.215
- Water bridges: E:T.213, E:H.216
SO4.23: 5 residues within 4Å:- Chain F: K.222, R.225, S.261, P.262, V.263
4 PLIP interactions:4 interactions with chain F- Hydrogen bonds: F:S.261, F:V.263
- Salt bridges: F:K.222, F:R.225
- 10 x GOL: GLYCEROL(Non-functional Binders)
GOL.3: 3 residues within 4Å:- Chain A: S.165, T.166, S.167
3 PLIP interactions:3 interactions with chain A- Hydrogen bonds: A:T.166, A:T.166, A:S.167
GOL.4: 4 residues within 4Å:- Chain A: P.138, S.139, Q.140, K.244
1 PLIP interactions:1 interactions with chain A- Hydrogen bonds: A:Q.140
GOL.5: 5 residues within 4Å:- Chain A: Q.63, L.82, Y.83
- Chain E: P.280, F.281
2 PLIP interactions:1 interactions with chain A, 1 interactions with chain E- Hydrogen bonds: A:Q.63, E:F.281
GOL.9: 3 residues within 4Å:- Chain A: P.118, D.119
- Chain C: T.3
4 PLIP interactions:4 interactions with chain A- Hydrogen bonds: A:D.119, A:D.119, A:D.119, A:D.119
GOL.11: 6 residues within 4Å:- Chain A: L.295, Q.299
- Chain B: Y.266, Q.270, G.274, D.276
4 PLIP interactions:2 interactions with chain B, 2 interactions with chain A- Hydrogen bonds: B:Q.270, B:D.276, A:Q.299, A:Q.299
GOL.16: 3 residues within 4Å:- Chain E: S.165, T.166, S.167
2 PLIP interactions:2 interactions with chain E- Hydrogen bonds: E:T.166, E:S.167
GOL.17: 4 residues within 4Å:- Chain E: P.138, S.139, Q.140, K.244
1 PLIP interactions:1 interactions with chain E- Hydrogen bonds: E:Q.140
GOL.18: 5 residues within 4Å:- Chain A: P.280, F.281
- Chain E: Q.63, L.82, Y.83
3 PLIP interactions:2 interactions with chain E, 1 interactions with chain A- Hydrogen bonds: E:Q.63, E:Y.83, A:F.281
GOL.22: 3 residues within 4Å:- Chain E: P.118, D.119
- Chain G: T.3
3 PLIP interactions:3 interactions with chain E- Hydrogen bonds: E:D.119, E:D.119, E:D.119
GOL.24: 6 residues within 4Å:- Chain E: L.295, Q.299
- Chain F: Y.266, Q.270, G.274, D.276
4 PLIP interactions:2 interactions with chain F, 2 interactions with chain E- Hydrogen bonds: F:Q.270, F:D.276, E:Q.299, E:Q.299
- 6 x MG: MAGNESIUM ION(Non-covalent)
MG.6: 4 residues within 4Å:- Chain A: D.131, D.188
- Ligands: MG.7, XZ2.13
4 PLIP interactions:2 interactions with chain A, 2 Ligand-Water interactions- Metal complexes: A:D.131, A:D.188, H2O.3, H2O.3
MG.7: 5 residues within 4Å:- Chain A: D.131, E.224, N.227
- Ligands: MG.6, XZ2.13
4 PLIP interactions:3 interactions with chain A, 1 Ligand-Water interactions- Metal complexes: A:D.131, A:E.224, A:E.224, H2O.3
MG.12: 3 residues within 4Å:- Chain B: D.131, Y.132, D.188
5 PLIP interactions:2 interactions with chain B, 3 Ligand-Water interactions- Metal complexes: B:D.131, B:D.188, H2O.9, H2O.9, H2O.10
MG.19: 4 residues within 4Å:- Chain E: D.131, D.188
- Ligands: MG.20, XZ2.26
4 PLIP interactions:2 interactions with chain E, 2 Ligand-Water interactions- Metal complexes: E:D.131, E:D.188, H2O.15, H2O.15
MG.20: 5 residues within 4Å:- Chain E: D.131, E.224, N.227
- Ligands: MG.19, XZ2.26
4 PLIP interactions:3 interactions with chain E, 1 Ligand-Water interactions- Metal complexes: E:D.131, E:E.224, E:E.224, H2O.16
MG.25: 3 residues within 4Å:- Chain F: D.131, Y.132, D.188
5 PLIP interactions:2 interactions with chain F, 3 Ligand-Water interactions- Metal complexes: F:D.131, F:D.188, H2O.21, H2O.21, H2O.22
- 2 x XZ2: 2-(3-chloro-4-fluorobenzyl)-6,7-dihydroxy-N,N-dimethyl-1-oxo-2,3-dihydro-1H-isoindole-4-sulfonamide(Non-covalent)
XZ2.13: 12 residues within 4Å:- Chain A: D.131, D.188, Y.215, P.217, Q.218, E.224
- Chain C: G.4
- Chain D: C.16, A.17
- Ligands: MG.6, MG.7, SO4.8
4 PLIP interactions:4 interactions with chain A- Hydrophobic interactions: A:P.217, A:P.217
- Water bridges: A:Y.132, A:N.227
XZ2.26: 12 residues within 4Å:- Chain E: D.131, D.188, Y.215, P.217, Q.218, E.224
- Chain G: G.4
- Chain H: C.16, A.17
- Ligands: MG.19, MG.20, SO4.21
5 PLIP interactions:5 interactions with chain E- Hydrophobic interactions: E:P.217, E:P.217
- Hydrogen bonds: E:D.188
- Water bridges: E:Y.132, E:N.227
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Metifiot, M. et al., Activities, Crystal Structures and Molecular Dynamics of Dihydro-1H-Isoindole Derivatives, Inhibitors of HIV-1 Integrase. Acs Chem.Biol. (2013)
- Release Date
- 2012-10-31
- Peptides
- PFV INTEGRASE: ABEF
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BE
AF
B
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.38 Å
- Oligo State
- homo-tetramer
- Ligands
- 2 x ZN: ZINC ION(Non-covalent)
- 6 x SO4: SULFATE ION(Non-functional Binders)
- 10 x GOL: GLYCEROL(Non-functional Binders)
- 6 x MG: MAGNESIUM ION(Non-covalent)
- 2 x XZ2: 2-(3-chloro-4-fluorobenzyl)-6,7-dihydroxy-N,N-dimethyl-1-oxo-2,3-dihydro-1H-isoindole-4-sulfonamide(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Metifiot, M. et al., Activities, Crystal Structures and Molecular Dynamics of Dihydro-1H-Isoindole Derivatives, Inhibitors of HIV-1 Integrase. Acs Chem.Biol. (2013)
- Release Date
- 2012-10-31
- Peptides
- PFV INTEGRASE: ABEF
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BE
AF
B