SMTL ID : 4blg.1

Crystal structure of MHV-68 Latency-associated nuclear antigen (LANA) C-terminal DNA binding domain

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.20 Å

Oligo State

homo-dimer

Ligands

7 x PO4: PHOSPHATE ION(Non-functional Binders)

PO4.1: 6 residues within 4Å: Chain A: H.47, T.50, Y.110, H.111, S.112, S.113 10 PLIP interactions: 10 interactions with chain A Hydrogen bonds: A:S.113, A:S.113, A:S.113, A:V.114 Water bridges: A:H.47, A:H.47, A:T.50, A:H.111 Salt bridges: A:H.47, A:H.111 PO4.2: 5 residues within 4Å: Chain A: A.23, P.24, R.25, L.26, K.98 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:A.23, A:R.25, A:L.26 Water bridges: A:Q.95 Salt bridges: A:R.25, A:K.98 PO4.3: 6 residues within 4Å: Chain A: Y.12, Q.13, G.14, M.15, K.53, Y.106 7 PLIP interactions: 7 interactions with chain A Hydrogen bonds: A:G.14, A:M.15, A:Y.106 Water bridges: A:Y.12, A:Q.13, A:K.53 Salt bridges: A:K.53 PO4.4: 5 residues within 4Å: Chain B: A.23, P.24, R.25, L.26, K.98 5 PLIP interactions: 5 interactions with chain B Hydrogen bonds: B:T.22, B:R.25, B:L.26 Salt bridges: B:R.25, B:K.98 PO4.5: 4 residues within 4Å: Chain B: K.11, Y.12, N.52, K.56 5 PLIP interactions: 5 interactions with chain B Hydrogen bonds: B:Y.12, B:N.52 Water bridges: B:K.56 Salt bridges: B:K.11, B:K.56 PO4.6: 5 residues within 4Å: Chain B: Y.12, G.14, M.15, K.53, Y.106 5 PLIP interactions: 5 interactions with chain B Hydrogen bonds: B:G.14, B:M.15, B:Y.106, B:Y.106 Salt bridges: B:K.53 PO4.7: 6 residues within 4Å: Chain B: H.47, T.50, Y.110, H.111, S.112, S.113 5 PLIP interactions: 5 interactions with chain B Hydrogen bonds: B:H.111, B:S.113, B:S.113 Salt bridges: B:H.47, B:H.111

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Correia, B. et al., Crystal Structure of the Gamma-2 Herpesvirus Lana DNA Binding Domain Identifies Charged Surface Residues which Impact Viral Latency. Plos Pathog. (2013)

Release Date

2013-10-30

Peptides

LATENCY-ASSOCIATED NUCLEAR ANTIGEN: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

LATENCY-ASSOCIATED NUCLEAR ANTIGEN