SMTL ID : 4bmv.5 (4 other biounits)

Short-chain dehydrogenase from Sphingobium yanoikuyae in complex with NADPH

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.50 Å

Oligo State

homo-dimer

Ligands

2 x NAP: NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE(Non-covalent)

NAP.1: 31 residues within 4Å: Chain A: G.11, A.12, S.13, S.14, G.15, I.16, A.35, R.36, D.37, A.61, D.62, L.63, T.64, N.88, A.89, G.90, L.111, I.138, G.139, S.140, Y.153, K.157, P.183, A.184, A.185, T.186, T.188, E.189, I.190, W.191, R.193 32 PLIP interactions: 32 interactions with chain A Hydrophobic interactions: A:P.183 Hydrogen bonds: A:G.11, A:S.13, A:S.13, A:S.14, A:S.14, A:S.14, A:I.16, A:R.36, A:D.37, A:D.62, A:L.63, A:N.88, A:G.90, A:K.157, A:T.186, A:T.188, A:T.188, A:E.189, A:I.190, A:W.191 Water bridges: A:S.13, A:G.17, A:N.88, A:R.193, A:R.193, A:R.193, A:R.193, A:R.193 Salt bridges: A:R.36, A:R.193, A:R.193 NAP.2: 30 residues within 4Å: Chain B: G.11, A.12, S.13, S.14, G.15, I.16, A.35, R.36, D.37, A.61, D.62, L.63, T.64, N.88, A.89, G.90, L.111, I.138, G.139, S.140, Y.153, K.157, P.183, A.184, A.185, T.186, T.188, E.189, I.190, W.191 23 PLIP interactions: 23 interactions with chain B Hydrophobic interactions: B:P.183 Hydrogen bonds: B:S.13, B:S.13, B:S.14, B:S.14, B:S.14, B:S.14, B:I.16, B:R.36, B:D.37, B:D.62, B:L.63, B:T.64, B:N.88, B:G.90, B:K.157, B:T.186, B:T.188, B:T.188, B:E.189, B:I.190, B:W.191 Salt bridges: B:R.36

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Man, H. et al., Structures of Alcohol Dehydrogenases from Ralstonia and Sphingobium Spp. Reveal the Molecular Basis for Their Recognition of 'Bulky-Bulky' Ketones. Top.Catal. (2014)

Release Date

2014-03-19

Peptides

SHORT-CHAIN DEHYDROGENASE: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
G

B
J

SHORT-CHAIN DEHYDROGENASE

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