SMTL ID : 4bof.1 (4 other biounits)

Crystal structure of arginine deiminase from group A streptococcus

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.48 Å

Oligo State

homo-dimer

Ligands

4 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 9 residues within 4Å: Chain A: Y.367, N.368, R.369, I.387, H.388, G.389, S.390 Chain B: F.46, D.49 6 PLIP interactions: 5 interactions with chain A, 1 interactions with chain B Hydrogen bonds: A:N.368, A:R.369, A:H.388, A:G.389, B:D.49 Salt bridges: A:R.369 SO4.2: 6 residues within 4Å: Chain A: G.100, R.101, G.142, L.143, T.144, D.145 8 PLIP interactions: 8 interactions with chain A Hydrogen bonds: A:R.101, A:L.143, A:T.144, A:T.144, A:D.145, A:D.145 Water bridges: A:G.100 Salt bridges: A:R.101 SO4.4: 8 residues within 4Å: Chain A: F.46 Chain B: Y.367, N.368, R.369, I.387, H.388, G.389, S.390 8 PLIP interactions: 7 interactions with chain B, 1 interactions with chain A Hydrogen bonds: B:N.368, B:N.368, B:R.369, B:G.389, B:S.390 Water bridges: B:H.388, A:D.49 Salt bridges: B:R.369 SO4.5: 6 residues within 4Å: Chain B: G.100, R.101, G.142, L.143, T.144, D.145 7 PLIP interactions: 7 interactions with chain B Hydrogen bonds: B:G.100, B:R.101, B:L.143, B:T.144, B:T.144, B:D.145 Salt bridges: B:R.101

1 x PGE: TRIETHYLENE GLYCOL(Non-functional Binders)

PGE.3: 12 residues within 4Å: Chain A: L.71, N.160, L.161, F.163, T.164, P.167, F.168, R.185, E.188, T.189, Y.191, G.192 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:R.185, A:E.188, A:T.189, A:Y.191, A:G.192

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Henningham, A. et al., Structure-informed design of an enzymatically inactive vaccine component for group A Streptococcus. MBio (2013)

Release Date

2013-08-21

Peptides

ARGININE DEIMINASE: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
H

ARGININE DEIMINASE

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