SMTL ID : 4c6b.1

Crystal structure of the dihydroorotase domain of human CAD with incomplete active site, obtained recombinantly from E. coli.

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.66 Å

Oligo State

homo-dimer

Ligands

10 x FMT: FORMIC ACID(Non-functional Binders)

FMT.1: 6 residues within 4Å: Chain A: P.133, I.134, R.155, S.156, V.157, H.158 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:I.134, A:I.134, A:R.155 Water bridges: A:S.156, A:S.156, A:T.182 FMT.2: 3 residues within 4Å: Chain A: H.281, R.284, R.285 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:H.281, A:R.284 FMT.3: 4 residues within 4Å: Chain A: H.131, P.365, Q.366, L.367 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:L.367 Water bridges: A:H.131 FMT.4: 5 residues within 4Å: Chain A: R.177, L.179 Chain B: M.148, Q.151, L.152 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:R.177, A:R.177 FMT.5: 4 residues within 4Å: Chain A: S.86, E.87, N.88, A.89 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:S.86, A:A.89 FMT.7: 6 residues within 4Å: Chain B: P.133, I.134, R.155, S.156, V.157, H.158 6 PLIP interactions: 6 interactions with chain B Hydrogen bonds: B:I.134, B:I.134, B:R.155 Water bridges: B:S.156, B:S.156, B:T.182 FMT.8: 3 residues within 4Å: Chain B: H.281, R.284, R.285 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:H.281, B:R.284 FMT.9: 4 residues within 4Å: Chain B: H.131, P.365, Q.366, L.367 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:L.367 Water bridges: B:H.131 FMT.10: 5 residues within 4Å: Chain A: M.148, Q.151, L.152 Chain B: R.177, L.179 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:R.177, B:R.177 FMT.11: 4 residues within 4Å: Chain B: S.86, E.87, N.88, A.89 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:S.86, B:A.89

2 x GOL: GLYCEROL(Non-functional Binders)

GOL.6: 6 residues within 4Å: Chain A: E.293, R.336, Q.354, W.359, P.360, Q.361 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:E.293, A:Q.354, A:Q.361 Water bridges: A:P.291, A:R.336 GOL.12: 6 residues within 4Å: Chain B: E.293, R.336, Q.354, W.359, P.360, Q.361 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:Q.354, B:Q.361 Water bridges: B:P.291, B:R.336

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Grande-Garcia, A. et al., Structure, Functional Characterization and Evolution of the Dihydroorotase Domain of Human Cad. Structure (2014)

Release Date

2014-02-05

Peptides

CAD PROTEIN: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

CAD PROTEIN

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