SMTL ID : 4ccv.1

Crystal structure of histidine-rich glycoprotein N2 domain reveals redox activity at an interdomain disulfide bridge: Implications for the regulation of angiogenesis

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.93 Å

Oligo State

monomer

Ligands

1 x NAG- NAG- BMA: beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Non-covalent)

NAG-NAG-BMA.1: 9 residues within 4Å: Chain A: A.31, Y.32, F.35, N.62, S.64, R.65, R.70, V.102 Ligands: GOL.3 No protein-ligand interaction detected (PLIP)

1 x GSH: GLUTATHIONE(Non-covalent)

GSH.2: 5 residues within 4Å: Chain A: R.36, R.61, C.63, S.66 Ligands: GOL.4 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:R.36

3 x GOL: GLYCEROL(Non-functional Binders)

GOL.3: 5 residues within 4Å: Chain A: R.65, R.70, H.71, E.106 Ligands: NAG-NAG-BMA.1 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:H.71, A:H.71 GOL.4: 7 residues within 4Å: Chain A: R.61, N.62, R.65, S.66, P.72, A.73 Ligands: GSH.2 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:R.61, A:N.62, A:A.73 GOL.5: 6 residues within 4Å: Chain A: Y.55, R.78, D.80, I.97, I.98, S.99 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:R.78, A:S.99

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kassaar, O. et al., Crystal Structure of Histidine-Rich Glycoprotein N2 Domain Reveals Redox Activity at an Interdomain Disulfide Bridge: Implications for Angiogenic Regulation. Blood (2014)

Release Date

2014-02-19

Peptides

HISTIDINE-RICH GLYCOPROTEIN: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

HISTIDINE-RICH GLYCOPROTEIN