SMTL ID : 4cdd.2 (1 other biounit)

Human DPP1 in complex with (2S)-N-((1S)-1-cyano-2-(4-(4-cyanophenyl) phenyl)ethyl)piperidine-2-carboxamide

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.35 Å

Oligo State

hetero-1-1-1-mer

Ligands

1 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG-NAG.1: 3 residues within 4Å: Chain A: Y.93, N.95, E.96 1 PLIP interactions: 1 interactions with chain A Hydrophobic interactions: A:Y.93

2 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.2: 4 residues within 4Å: Chain A: N.5, N.65 Chain C: F.6, L.8 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.65 NAG.3: 1 residues within 4Å: Chain B: N.47 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:N.47

1 x GDI: (2S)-N-[(2S)-1-AZANYLIDENE-3-[4-(4-CYANOPHENYL)PHENYL]PROPAN-2-YL]PIPERIDINE-2-CARBOXAMIDE(Covalent)

GDI.4: 17 residues within 4Å: Chain A: D.1, T.2, P.3 Chain B: Q.23, G.27, S.28, C.29, Y.30, E.70, G.71, G.72, F.73, A.144 Chain C: T.9, N.10, H.11, A.12 9 PLIP interactions: 5 interactions with chain B, 2 interactions with chain C, 2 interactions with chain A Hydrophobic interactions: B:F.73, B:A.144, C:A.12, A:D.1 Hydrogen bonds: B:Q.23, B:C.29, B:G.72, C:N.10, A:D.1

1 x CL: CHLORIDE ION(Non-functional Binders)

CL.5: 6 residues within 4Å: Chain B: F.73, P.74, Y.75, Y.118 Chain C: I.59, V.61 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Furber, M. et al., Cathepsin C Inhibitors: Property Optimization and Identification of a Clinical Candidate. J.Med.Chem. (2014)

Release Date

2014-03-19

Peptides

DIPEPTIDYL PEPTIDASE 1 EXCLUSION DOMAIN CHAIN: A
DIPEPTIDYL PEPTIDASE 1 HEAVY CHAIN: B
DIPEPTIDYL PEPTIDASE 1 LIGHT CHAIN: C

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

DIPEPTIDYL PEPTIDASE 1 EXCLUSION DOMAIN CHAIN

DIPEPTIDYL PEPTIDASE 1 HEAVY CHAIN

DIPEPTIDYL PEPTIDASE 1 LIGHT CHAIN

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