SMTL ID : 4cll.1

Crystal structure of human soluble Adenylyl Cyclase in complex with bicarbonate

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.70 Å

Oligo State

monomer

Ligands

1 x BCT: BICARBONATE ION(Non-functional Binders)

BCT.1: 7 residues within 4Å: Chain A: K.95, L.166, V.167, V.172, R.176, F.336, M.337 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:V.167, A:V.167, A:R.176, A:R.176, A:M.337

10 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.2: 7 residues within 4Å: Chain A: F.96, A.97, G.98, D.99, A.100, T.405 Ligands: GOL.12 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:D.99, A:A.100 EDO.3: 7 residues within 4Å: Chain A: F.58, S.59, S.60, D.65, R.66, G.67, L.289 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:S.59, A:D.65, A:G.67 Water bridges: A:D.65, A:A.68 EDO.4: 4 residues within 4Å: Chain A: Q.9, V.14, C.253 Ligands: EDO.5 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:Q.9 EDO.5: 4 residues within 4Å: Chain A: C.253, T.399, V.400 Ligands: EDO.4 No protein-ligand interaction detected (PLIP) EDO.6: 4 residues within 4Å: Chain A: P.191, W.194, Q.195, R.211 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:P.191 EDO.7: 4 residues within 4Å: Chain A: L.255, K.256, D.258, L.261 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:K.256, A:D.258 EDO.8: 5 residues within 4Å: Chain A: Y.38, F.39, H.151, I.152, S.153 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:F.39, A:I.152, A:S.153 EDO.9: 4 residues within 4Å: Chain A: R.109, G.150, H.151, N.192 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:R.109, A:R.109, A:H.151, A:N.192, A:N.192 EDO.10: 2 residues within 4Å: Chain A: Q.329, P.351 1 PLIP interactions: 1 interactions with chain A Water bridges: A:Q.329 EDO.11: 4 residues within 4Å: Chain A: G.389, I.390, Q.409, K.410 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:I.390, A:Q.409 Water bridges: A:S.388, A:K.410

3 x GOL: GLYCEROL(Non-functional Binders)

GOL.12: 11 residues within 4Å: Chain A: G.98, D.99, F.296, N.333, K.334, L.345, T.405, V.406, I.407, V.411 Ligands: EDO.2 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:G.98, A:N.333, A:V.406, A:V.406 Water bridges: A:G.408 GOL.13: 6 residues within 4Å: Chain A: T.322, L.325, K.326, G.330, Q.331, I.332 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:T.322, A:I.332, A:I.332 Water bridges: A:Y.318, A:L.325, A:G.330 GOL.14: 6 residues within 4Å: Chain A: E.288, R.290, V.292, V.347, F.348, G.349 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:R.290 Water bridges: A:P.291, A:G.349, A:F.350

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kleinboelting, S. et al., Crystal Structures of Human Soluble Adenylyl Cyclase Reveal Mechanisms of Catalysis and of its Activation Through Bicarbonate. Proc.Natl.Acad.Sci.USA (2014)

Release Date

2014-03-05

Peptides

ADENYLATE CYCLASE TYPE 10: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

ADENYLATE CYCLASE TYPE 10

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