SMTL ID : 4cnl.1

Crystal structure of the Choline-binding domain of CbpL from Streptococcus pneumoniae

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.70 Å

Oligo State

monomer

Ligands

8 x CHT: CHOLINE ION(Non-covalent)

CHT.1: 5 residues within 4Å: Chain A: W.83, W.92, Y.110, M.118, D.138 5 PLIP interactions: 5 interactions with chain A pi-Cation interactions: A:W.83, A:W.83, A:W.92, A:W.92, A:Y.110 CHT.2: 4 residues within 4Å: Chain A: W.123, W.132, Y.150, M.158 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:W.123 pi-Cation interactions: A:W.123, A:W.123, A:W.132, A:W.132, A:Y.150 CHT.3: 5 residues within 4Å: Chain A: W.5, W.12, Y.30, M.38, D.58 6 PLIP interactions: 6 interactions with chain A Water bridges: A:S.57 pi-Cation interactions: A:W.5, A:W.5, A:W.12, A:W.12, A:Y.30 CHT.4: 5 residues within 4Å: Chain A: W.146, G.148, N.149, Y.169, W.177 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:Y.169 Water bridges: A:Y.169 pi-Cation interactions: A:W.146, A:W.146 CHT.5: 6 residues within 4Å: Chain A: W.106, G.108, Y.129, Y.133, Y.141, D.155 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:Y.141 pi-Cation interactions: A:W.106, A:W.106, A:Y.141 CHT.6: 5 residues within 4Å: Chain A: W.66, G.68, Y.93, Y.101, D.115 4 PLIP interactions: 4 interactions with chain A Water bridges: A:G.68 pi-Cation interactions: A:W.66, A:W.66, A:Y.101 CHT.7: 4 residues within 4Å: Chain A: W.43, W.52, Y.70, M.78 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:Y.70 pi-Cation interactions: A:W.43, A:W.43, A:W.52, A:W.52, A:Y.70 CHT.8: 6 residues within 4Å: Chain A: W.26, G.28, Y.49, Y.53, Y.61, N.75 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:Y.61, A:Y.61 pi-Cation interactions: A:W.26, A:W.26, A:Y.61

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.9: 4 residues within 4Å: Chain A: G.121, Y.134, T.136, S.137 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:Y.134, A:S.137 Water bridges: A:D.138, A:Q.147

2 x SO4: SULFATE ION(Non-functional Binders)

SO4.10: 4 residues within 4Å: Chain A: G.81, Y.94, K.96, S.97 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:S.97 SO4.11: 3 residues within 4Å: Chain A: K.73, N.75, K.77 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:N.75, A:N.75 Water bridges: A:K.77 Salt bridges: A:K.73, A:K.77

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Gutierrez-Fernandez, J. et al., Modular Architecture and Unique Teichoic Acid Recognition Features of Choline-Binding Protein L (Cbpl) Contributing to Pneumococcal Pathogenesis. Sci.Rep. (2016)

Release Date

2015-02-18

Peptides

PUTATIVE PNEUMOCOCCAL SURFACE PROTEIN: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

PUTATIVE PNEUMOCOCCAL SURFACE PROTEIN