SMTL ID : 4cq8.1 (1 other biounit)

Plasmodium falciparum dihydroorotate dehydrogenase (DHODH) in complex with Genz-669178

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.98 Å

Oligo State

monomer

Ligands

1 x FMN: FLAVIN MONONUCLEOTIDE(Non-covalent)

FMN.1: 24 residues within 4Å: Chain A: A.86, A.87, G.88, K.91, G.110, T.111, I.125, I.134, N.136, C.138, N.204, K.261, S.289, N.290, T.291, S.309, G.310, L.313, S.337, G.338, G.339, Y.360, S.361 Ligands: ORO.2 29 PLIP interactions: 29 interactions with chain A Hydrophobic interactions: A:I.125, A:I.134, A:N.136, A:Y.360, A:Y.360 Hydrogen bonds: A:A.87, A:K.91, A:T.111, A:T.111, A:T.111, A:S.173, A:N.204, A:K.261, A:K.261, A:K.261, A:N.290, A:G.310, A:S.337, A:G.339, A:Y.360, A:S.361, A:S.361 Water bridges: A:A.87, A:E.108, A:G.338, A:G.338, A:G.338, A:I.340, A:Q.358

1 x ORO: OROTIC ACID(Non-covalent)

ORO.2: 12 residues within 4Å: Chain A: K.91, N.136, C.138, G.139, F.140, N.204, S.207, P.208, N.209, N.290, T.291 Ligands: FMN.1 12 PLIP interactions: 12 interactions with chain A Hydrophobic interactions: A:F.140 Hydrogen bonds: A:N.136, A:N.136, A:G.139, A:F.140, A:N.204, A:S.207, A:N.209, A:N.290, A:N.290, A:T.291 Salt bridges: A:K.91

1 x JBW: 5-(4-cyano-2-methyl-1H-benzimidazol-1-yl)-N-cyclopropylthiophene-2-carboxamide(Non-covalent)

JBW.3: 17 residues within 4Å: Chain A: Y.30, F.33, L.34, C.37, G.43, C.46, H.47, L.49, F.50, F.89, I.125, R.127, Y.360, L.363, V.364, G.367, M.368 9 PLIP interactions: 9 interactions with chain A Hydrophobic interactions: A:L.49, A:F.50, A:F.50, A:F.89, A:I.125, A:V.364 Hydrogen bonds: A:H.47, A:R.127 Water bridges: A:M.368

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Ross, L.S. et al., In Vitro Resistance Selections for Plasmodium Falciparum Dihydroorotate Dehydrogenase Inhibitors Give Mutants with Multiple Point Mutations in the Drug-Binding Site and Altered Growth. J.Biol.Chem. (2014)

Release Date

2014-04-30

Peptides

DIHYDROOROTATE DEHYDROGENASE: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

DIHYDROOROTATE DEHYDROGENASE

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