SMTL ID : 4crm.1

Cryo-EM of a pre-recycling complex with eRF1 and ABCE1

Coordinates

PDB Format

Method

ELECTRON MICROSCOPY 8.75 Å

Oligo State

hetero-1-1-mer

Ligands

1 x ATP: ADENOSINE-5'-TRIPHOSPHATE(Non-covalent)

ATP.1: 14 residues within 4Å: Chain A: Y.87, F.92, N.112, G.113, I.114, G.115, K.116, S.117, T.118, Y.172, E.247, H.279, S.299 Ligands: MG.5 16 PLIP interactions: 16 interactions with chain A Hydrogen bonds: A:N.112, A:N.112, A:G.113, A:G.113, A:I.114, A:G.115, A:G.115, A:K.116, A:S.117, A:T.118, A:E.247, A:S.299 Salt bridges: A:K.116, A:K.116 pi-Stacking: A:Y.87, A:Y.87

2 x SF4: IRON/SULFUR CLUSTER(Covalent)

SF4.2: 11 residues within 4Å: Chain A: C.29, C.38, I.50, C.55, I.56, C.58, G.59, I.60, C.61, V.62, I.72 3 PLIP interactions: 3 interactions with chain A, Metal complexes: A:C.55, A:C.58, A:C.61 SF4.3: 11 residues within 4Å: Chain A: C.16, K.17, P.18, C.21, R.22, E.24, C.25, C.65, P.66, F.67, A.69 4 PLIP interactions: 4 interactions with chain A, Salt bridges: A:E.24 Metal complexes: A:C.16, A:C.21, A:C.65

1 x ADP: ADENOSINE-5'-DIPHOSPHATE(Non-covalent)

ADP.4: 13 residues within 4Å: Chain A: R.217, Q.363, D.365, F.366, E.386, N.387, G.388, T.389, G.390, K.391, T.392, T.393, S.546 13 PLIP interactions: 13 interactions with chain A Hydrogen bonds: A:R.217, A:Q.363, A:E.386, A:N.387, A:G.388, A:G.388, A:T.389, A:G.390, A:K.391, A:T.392, A:T.392, A:T.392, A:T.393

1 x MG: MAGNESIUM ION(Non-covalent)

MG.5: 5 residues within 4Å: Chain A: K.116, S.117, Q.171, D.246 Ligands: ATP.1 1 PLIP interactions: 1 interactions with chain A Metal complexes: A:S.117

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Preis, A. et al., Cryoelectron Microscopic Structures of Eukaryotic Translation Termination Complexes Containing Erf1-Erf3 or Erf1-Abce1. Cell Rep. (2014)

Release Date

2014-07-23

Peptides

TRANSLATION INITIATION FACTOR RLI1: A
EUKARYOTIC PEPTIDE CHAIN RELEASE FACTOR SUBUNIT 1: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
P

B
X

TRANSLATION INITIATION FACTOR RLI1

EUKARYOTIC PEPTIDE CHAIN RELEASE FACTOR SUBUNIT 1

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