SMTL ID : 4csw.1

Rhodothermus marinus YCFD-like ribosomal protein L16 Arginyl hydroxylase

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.82 Å

Oligo State

homo-dimer

Ligands

1 x CIT: CITRIC ACID(Non-functional Binders)

CIT.1: 2 residues within 4Å: Chain A: E.56 Ligands: GOL.4 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:E.56

2 x UN9: N-[(1-CHLORO-4-HYDROXYISOQUINOLIN-3-YL)CARBONYL]GLYCINE(Non-covalent)

UN9.2: 4 residues within 4Å: Chain A: P.55, E.56, F.93, V.94 1 PLIP interactions: 1 interactions with chain A Hydrophobic interactions: A:E.56 UN9.3: 7 residues within 4Å: Chain A: I.53, T.54, P.55, W.159, D.217, M.219 Ligands: GOL.4 7 PLIP interactions: 7 interactions with chain A Hydrophobic interactions: A:T.54 Hydrogen bonds: A:W.159, A:W.159, A:D.217 pi-Stacking: A:W.159, A:W.159, A:W.159

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.4: 2 residues within 4Å: Ligands: CIT.1, UN9.3 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:D.217, A:D.217

1 x MN: MANGANESE (II) ION(Non-covalent)

MN.5: 3 residues within 4Å: Chain B: H.147, D.149, H.210 3 PLIP interactions: 3 interactions with chain B Metal complexes: B:H.147, B:D.149, B:H.210

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Chowdhury, R. et al., Ribosomal oxygenases are structurally conserved from prokaryotes to humans. Nature (2014)

Release Date

2014-04-09

Peptides

CUPIN 4 FAMILY PROTEIN: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

CUPIN 4 FAMILY PROTEIN

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