SMTL ID : 4cwa.2 (1 other biounit)

Structure of Plasmodium Falciparum Spermidine Synthase in Complex with 1H-Benzimidazole-2-pentanamine

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.02 Å

Oligo State

homo-dimer

Ligands

1 x 1PG: 2-(2-{2-[2-(2-METHOXY-ETHOXY)-ETHOXY]-ETHOXY}-ETHOXY)-ETHANOL(Non-covalent)

1PG.1: 8 residues within 4Å: Chain A: W.5, S.7, F.9, S.19 Chain B: W.5, S.7, F.9, S.19 3 PLIP interactions: 1 interactions with chain B, 2 interactions with chain A Hydrogen bonds: B:S.19, A:S.7, A:S.19

1 x JA2: 5-(1H-benzimidazol-2-yl)pentan-1-amine(Non-covalent)

JA2.2: 17 residues within 4Å: Chain B: W.13, V.53, I.54, Q.55, Y.64, G.87, G.88, D.89, E.109, V.114, D.158, S.159, S.160, D.161, Y.226, P.227, I.231 5 PLIP interactions: 5 interactions with chain B Hydrophobic interactions: B:Q.55, B:Y.64, B:V.114 Hydrogen bonds: B:Q.55, B:D.161

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Sprenger, J. et al., Three-Dimensional Structures of Plasmodium Falciparum Spermidine Synthase with Bound Inhibitors Suggest New Strategies for Drug Design. Acta Crystallogr.,Sect.D (2015)

Release Date

2014-10-08

Peptides

SPERMIDINE SYNTHASE: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

B
C

SPERMIDINE SYNTHASE

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