SMTL ID : 4cyi.2 (3 other biounits)

Chaetomium thermophilum Pan3

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.42 Å

Oligo State

homo-dimer

Ligands

2 x ATP: ADENOSINE-5'-TRIPHOSPHATE(Non-covalent)

ATP.1: 22 residues within 4Å: Chain A: L.54, D.55, T.56, N.61, S.69, V.71, A.84, R.86, V.115, Y.135, D.136, F.137, H.138, P.139, S.141, K.142, T.143, S.195, K.196, I.198, S.208 Ligands: MG.2 15 PLIP interactions: 15 interactions with chain A Hydrogen bonds: A:N.61, A:N.61, A:S.69, A:R.86, A:D.136, A:H.138, A:S.141 Water bridges: A:S.69, A:R.86, A:H.138, A:S.141 Salt bridges: A:R.86, A:K.196, A:K.196, A:K.196 ATP.3: 23 residues within 4Å: Chain B: L.54, D.55, N.61, C.64, S.69, V.71, A.84, R.86, V.115, Y.135, D.136, F.137, H.138, P.139, S.141, K.142, T.143, E.146, S.195, K.196, I.198, S.208 Ligands: MG.4 17 PLIP interactions: 17 interactions with chain B Hydrogen bonds: B:S.69, B:S.69, B:R.86, B:D.136, B:H.138, B:S.141, B:S.195 Water bridges: B:S.57, B:R.86, B:R.86, B:H.138, B:S.141, B:Q.145 Salt bridges: B:R.86, B:K.196, B:K.196, B:K.196

2 x MG: MAGNESIUM ION(Non-covalent)

MG.2: 4 residues within 4Å: Chain A: D.55, S.69, W.70 Ligands: ATP.1 2 PLIP interactions: 2 interactions with chain A Metal complexes: A:D.55, A:S.69 MG.4: 5 residues within 4Å: Chain B: D.55, S.69, W.70, R.86 Ligands: ATP.3 3 PLIP interactions: 2 interactions with chain B, 1 Ligand-Water interactions Metal complexes: B:D.55, B:S.69, H2O.6

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Wolf, J. et al., Structural Basis for Pan3 Binding to Pan2 and its Function in Mrna Recruitment and Deadenylation. Embo J. (2014)

Release Date

2014-06-11

Peptides

PAB-DEPENDENT POLY(A)-SPECIFIC RIBONUCLEASE SUBUNIT PAN3-LIKE PROTEIN, PAB-DEPENDENT POLY(A)-SPECIFIC RIBONUCLEASE SUBUNIT PAN3-L PROTEIN: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
C

B
D

PAB-DEPENDENT POLY(A)-SPECIFIC RIBONUCLEASE SUBUNIT PAN3-LIKE PROTEIN, PAB-DEPENDENT POLY(A)-SPECIFIC RIBONUCLEASE SUBUNIT PAN3-L PROTEIN

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