SMTL ID : 4czp.1

Crystal structure of the extralong fungal manganese peroxidase from ceriporiopsis subvermispora in complex with manganese (anomalous data)

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.90 Å

Oligo State

monomer

Ligands

2 x CA: CALCIUM ION(Non-covalent)

CA.1: 5 residues within 4Å: Chain A: T.178, D.195, T.197, T.200, D.202 5 PLIP interactions: 5 interactions with chain A Metal complexes: A:D.195, A:D.195, A:T.197, A:T.200, A:D.202 CA.2: 4 residues within 4Å: Chain A: D.51, G.66, D.68, S.70 5 PLIP interactions: 3 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:D.51, A:D.68, A:S.70, H2O.2, H2O.2

2 x MN: MANGANESE (II) ION(Non-covalent)

MN.3: 4 residues within 4Å: Chain A: E.39, E.43, D.183 Ligands: HEM.5 5 PLIP interactions: 3 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:E.39, A:E.43, A:D.183, H2O.2, H2O.2 MN.4: 1 residues within 4Å: Chain A: D.89 5 PLIP interactions: 1 interactions with chain A, 4 Ligand-Water interactions Metal complexes: A:D.89, H2O.4, H2O.4, H2O.4, H2O.12

1 x HEM: PROTOPORPHYRIN IX CONTAINING FE(Non-covalent)

HEM.5: 27 residues within 4Å: Chain A: E.39, H.42, E.43, I.45, R.46, F.49, P.146, E.147, P.148, I.155, F.159, L.173, L.174, S.176, H.177, A.180, R.181, A.182, D.183, K.184, V.185, F.194, L.247, S.249, F.277, F.281 Ligands: MN.3 31 PLIP interactions: 31 interactions with chain A, Hydrophobic interactions: A:H.42, A:I.45, A:R.46, A:F.49, A:F.49, A:F.49, A:F.49, A:P.146, A:P.148, A:I.155, A:F.159, A:L.173, A:L.174, A:A.180, A:A.182, A:V.185, A:F.194, A:L.247, A:F.277, A:F.281 Hydrogen bonds: A:R.181, A:D.183, A:K.184, A:V.185 Water bridges: A:R.46, A:R.181, A:D.183 Salt bridges: A:H.42, A:R.46 pi-Stacking: A:F.194 Metal complexes: A:H.177

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.6: 8 residues within 4Å: Chain A: L.211, K.212, G.213, V.226, S.227, R.246, F.251, E.324 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:L.211, A:G.213, A:R.246

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Fernandez-Fueyo, E. et al., Structural Implications of the C-Terminal Tail in the Catalytic and Stability Properties of Manganese Peroxidases from Ligninolytic Fungi. Acta Crystallogr.,Sect.D (2014)

Release Date

2014-12-10

Peptides

EXTRALONG MANGANESE PEROXIDASE: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

EXTRALONG MANGANESE PEROXIDASE

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