SMTL ID : 4d0z.5 (5 other biounits)

GalNAc-T2 crystal soaked with UDP-5SGalNAc, mEA2 and manganese (Higher resolution dataset)

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.20 Å

Oligo State

monomer

Ligands

1 x MN: MANGANESE (II) ION(Non-covalent)

MN.1: 4 residues within 4Å: Chain A: D.224, H.226, H.359 Ligands: HWU.2 4 PLIP interactions: 3 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:D.224, A:H.226, A:H.359, H2O.2

1 x HWU: (2R,3R,4R,5R,6R)-3-(acetylamino)-4,5-dihydroxy-6-(hydroxymethyl)tetrahydro-2H-thiopyran-2-yl [(2R,3S,4R,5R)-5-(2,4-dioxo-3,4-dihydropyrimidin-1(2H)-yl)-3,4-dihydroxytetrahydrofuran-2-yl]methyl dihydrogen diphosphate(Non-covalent)

HWU.2: 24 residues within 4Å: Chain A: T.143, F.144, H.145, D.176, R.201, G.203, L.204, R.208, D.224, S.225, H.226, A.307, G.308, G.309, L.310, V.330, W.331, G.332, E.334, N.335, H.359, R.362, Y.367 Ligands: MN.1 20 PLIP interactions: 20 interactions with chain A Hydrophobic interactions: A:L.310 Hydrogen bonds: A:H.145, A:D.176, A:R.201, A:R.208, A:D.224, A:D.224, A:S.225, A:S.225, A:S.225, A:G.308, A:G.309, A:G.332, A:E.334 Water bridges: A:R.362, A:H.365 Salt bridges: A:H.226, A:H.359, A:R.362 pi-Stacking: A:Y.367

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Lira-Navarrete, E. et al., Substrate-Guided Front-Face Reaction Revealed by Combined Structural Snapshots and Metadynamics for the Polypeptide N- Acetylgalactosaminyltransferase 2. Angew.Chem.Int.Ed.Engl. (2014)

Release Date

2014-05-28

Peptides

POLYPEPTIDE N-ACETYLGALACTOSAMINYLTRANSFERASE 2: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
F

POLYPEPTIDE N-ACETYLGALACTOSAMINYLTRANSFERASE 2

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