SMTL ID : 4d4z.1 (1 other biounit)

STRUCTURE OF HUMAN DEOXYHYPUSINE HYDROXYLASE in complex with glycerol

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.70 Å

Oligo State

monomer

Ligands

2 x FE: FE (III) ION(Non-covalent)

FE.1: 6 residues within 4Å: Chain A: H.94, E.95, H.212 Ligands: FE.2, OH.3, GOL.4 4 PLIP interactions: 3 interactions with chain A, 1 Ligand-Ligand interactions Metal complexes: A:H.94, A:E.95, A:H.212, OH.3 FE.2: 6 residues within 4Å: Chain A: H.61, H.245, E.246 Ligands: FE.1, OH.3, GOL.4 5 PLIP interactions: 3 interactions with chain A, 1 Ligand-Water interactions, 1 Ligand-Ligand interactions Metal complexes: A:H.61, A:H.245, A:E.246, H2O.1, OH.3

1 x OH: HYDROXIDE ION(Non-covalent)

OH.3: 10 residues within 4Å: Chain A: H.61, H.94, E.95, H.212, M.242, H.245, E.246 Ligands: FE.1, FE.2, GOL.4 No protein-ligand interaction detected (PLIP)

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.4: 13 residues within 4Å: Chain A: H.61, Y.65, H.94, E.95, E.98, P.154, H.212, E.213, Y.216, E.246 Ligands: FE.1, FE.2, OH.3 No protein-ligand interaction detected (PLIP)

1 x B3P: 2-[3-(2-HYDROXY-1,1-DIHYDROXYMETHYL-ETHYLAMINO)-PROPYLAMINO]-2-HYDROXYMETHYL-PROPANE-1,3-DIOL(Non-covalent)

B3P.5: 6 residues within 4Å: Chain A: F.52, D.53, M.78, D.81, D.85, Q.88 7 PLIP interactions: 7 interactions with chain A Hydrogen bonds: A:D.53, A:D.53, A:D.81, A:D.81, A:D.85 Water bridges: A:S.49, A:D.53

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Han, Z. et al., Crystal Structure of the Peroxo-Diiron(III) Intermediate of Deoxyhypusine Hydroxylase, an Oxygenase Involved in Hypusination. Structure (2015)

Release Date

2015-04-15

Peptides

DEOXYHYPUSINE HYDROXYLASE: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

DEOXYHYPUSINE HYDROXYLASE

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