SMTL ID : 4d5j.1

Hypocrea jecorina cellobiohydrolase Cel7A E217Q soaked with xylotriose.

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.50 Å

Oligo State

homo-dimer

Ligands

2 x XYP- XYP- XYP: beta-D-xylopyranose-(1-4)-beta-D-xylopyranose-(1-4)-beta-D-xylopyranose

XYP-XYP-XYP.1: 13 residues within 4Å: Chain A: N.37, W.38, R.39, W.40, N.49, Y.82, K.102, N.103, V.104, D.179, K.181, T.201, Y.247 7 PLIP interactions: 7 interactions with chain A Hydrophobic interactions: A:F.182, A:F.182 Hydrogen bonds: A:A.163, A:N.49 Water bridges: A:R.39, A:W.40, A:T.41, A:Y.51, A:D.52, A:N.200 XYP-XYP-XYP.5: 13 residues within 4Å: Chain B: N.37, W.38, R.39, W.40, N.49, Y.82, K.102, N.103, V.104, D.179, K.181, T.201, Y.247 6 PLIP interactions: 6 interactions with chain B Hydrogen bonds: B:N.49 Water bridges: B:R.39, B:W.40, B:T.41, B:Y.51, B:N.200

4 x CO: COBALT (II) ION(Non-covalent)

CO.2: 2 residues within 4Å: Chain A: H.206, E.239 6 PLIP interactions: 2 interactions with chain A, 4 Ligand-Water interactions Metal complexes: A:H.206, A:E.239, H2O.14, H2O.14, H2O.14, H2O.15 CO.3: 7 residues within 4Å: Chain A: E.295, N.301, E.325 Chain B: E.295, N.301, E.325 Ligands: CO.7 5 PLIP interactions: 2 interactions with chain B, 3 interactions with chain A Metal complexes: B:E.295, B:E.325, A:E.295, A:E.295, A:E.325 CO.6: 2 residues within 4Å: Chain B: H.206, E.239 6 PLIP interactions: 2 interactions with chain B, 4 Ligand-Water interactions Metal complexes: B:H.206, B:E.239, H2O.37, H2O.37, H2O.37, H2O.38 CO.7: 7 residues within 4Å: Chain A: E.295, N.301, E.325 Chain B: E.295, N.301, E.325 Ligands: CO.3 5 PLIP interactions: 3 interactions with chain B, 2 interactions with chain A Metal complexes: B:E.295, B:E.295, B:E.325, A:E.295, A:E.325

2 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.4: 6 residues within 4Å: Chain A: N.270, F.273, T.281, P.314 Chain B: S.21, G.22 7 PLIP interactions: 3 interactions with chain B, 4 interactions with chain A Water bridges: B:S.21, B:S.21, B:G.22, A:N.270, A:N.270, A:Q.313, A:N.315 NAG.8: 6 residues within 4Å: Chain A: S.21, G.22 Chain B: N.270, F.273, T.281, P.314 7 PLIP interactions: 4 interactions with chain B, 3 interactions with chain A Water bridges: B:N.270, B:N.270, B:Q.313, B:N.315, A:S.21, A:S.21, A:G.22

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Haddad Momeni, M. et al., Structural Insights Into the Inhibition of Cellobiohydrolase Cel7A by Xylooligosaccharides. FEBS J. (2015)

Release Date

2015-03-25

Peptides

CELLULOSE 1,4-BETA-CELLOBIOSIDASE: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

CELLULOSE 1,4-BETA-CELLOBIOSIDASE

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