SMTL ID : 4di5.1

Co-crystal structure of WT 5-epi-Aristolochene synthase from Nicotiana tobaccum with geraniline

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.30 Å

Oligo State

monomer

Ligands

2 x ACT: ACETATE ION(Non-functional Binders)

ACT.1: 7 residues within 4Å: Chain A: S.141, H.142, R.144, K.187, E.472, W.475, N.479 6 PLIP interactions: 6 interactions with chain A Hydrophobic interactions: A:E.472, A:W.475 Hydrogen bonds: A:R.144, A:N.479 Salt bridges: A:R.144, A:K.187 ACT.2: 5 residues within 4Å: Chain A: R.195, F.196, S.199, S.200, N.527 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:F.196 Hydrogen bonds: A:S.200 Salt bridges: A:R.195

1 x 1GA: Geraniline(Non-covalent)

1GA.3: 12 residues within 4Å: Chain A: R.251, W.260, I.281, S.285, D.288, T.389, T.390, L.394, D.431, Y.507, Y.514 Ligands: DPO.5 5 PLIP interactions: 5 interactions with chain A Hydrophobic interactions: A:W.260, A:T.390, A:L.394, A:Y.514 Hydrogen bonds: A:I.281

2 x MG: MAGNESIUM ION(Non-covalent)

MG.4: 6 residues within 4Å: Chain A: R.428, D.431, D.432, T.435, E.439 Ligands: DPO.5 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:D.431, A:D.432, A:T.435 MG.6: 3 residues within 4Å: Chain A: D.288, D.292 Ligands: DPO.5 5 PLIP interactions: 2 interactions with chain A, 3 Ligand-Water interactions Metal complexes: A:D.288, A:D.292, H2O.9, H2O.9, H2O.9

1 x DPO: DIPHOSPHATE(Non-covalent)

DPO.5: 10 residues within 4Å: Chain A: R.251, E.366, T.388, R.428, D.431, T.435, E.439 Ligands: 1GA.3, MG.4, MG.6 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:D.431, A:E.439 Water bridges: A:R.251 Salt bridges: A:R.251, A:R.428

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Noel, J.P. et al., Co-crystal structure of WT 5-epi-Aristolochene synthase from Nicotiana tobaccum with geraniline. To be Published

Release Date

2012-02-29

Peptides

5-epi-aristolochene synthase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

5-epi-aristolochene synthase