SMTL ID : 4did.1

Crystal structure of Salmonella effector N-terminal domain SopB in complex with Cdc42

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.35 Å

Oligo State

hetero-1-1-mer

Ligands

1 x GDP: GUANOSINE-5'-DIPHOSPHATE(Non-covalent)

GDP.1: 17 residues within 4Å: Chain A: D.21, G.22, A.23, V.24, G.25, K.26, T.27, C.28, F.38, V.43, Q.126, D.128, L.129, S.168, A.169, L.170 Ligands: MG.2 22 PLIP interactions: 22 interactions with chain A Hydrogen bonds: A:D.21, A:A.23, A:V.24, A:G.25, A:K.26, A:T.27, A:T.27, A:C.28, A:Q.126, A:Q.126, A:A.169, A:L.170 Water bridges: A:K.26, A:K.26, A:K.26, A:K.26, A:T.27, A:L.29 Salt bridges: A:K.26, A:D.128 pi-Stacking: A:F.38, A:F.38

1 x MG: MAGNESIUM ION(Non-covalent)

MG.2: 4 residues within 4Å: Chain A: T.27, T.45, D.67 Ligands: GDP.1 5 PLIP interactions: 2 interactions with chain A, 3 Ligand-Water interactions Metal complexes: A:T.27, A:T.45, H2O.1, H2O.1, H2O.2

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Burkinshaw, B.J. et al., Structure of Salmonella Effector Protein SopB N-terminal Domain in Complex with Host Rho GTPase Cdc42. J.Biol.Chem. (2012)

Release Date

2012-02-29

Peptides

Cell division control protein 42 homolog: A
Inositol phosphate phosphatase sopB: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Cell division control protein 42 homolog

Inositol phosphate phosphatase sopB