SMTL ID : 4djl.1

Carboxypeptidase T with N-sulfamoyl-L-phenylalanine

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.55 Å

Oligo State

monomer

Ligands

1 x CXA: PHENYLALANINE-N-SULFONAMIDE(Non-covalent)

CXA.1: 17 residues within 4Å: Chain A: H.69, E.72, R.129, N.146, R.147, H.204, T.205, L.211, A.251, L.254, Y.255, T.257, D.260, T.275, E.277 Ligands: GOL.15, ZN.20 19 PLIP interactions: 19 interactions with chain A Hydrophobic interactions: A:L.211, A:A.251, A:L.254, A:Y.255, A:T.257, A:T.275 Hydrogen bonds: A:R.129, A:R.129, A:N.146, A:Y.255, A:Y.255, A:E.277, A:E.277 Water bridges: A:R.71, A:R.71 Salt bridges: A:H.69, A:R.129, A:R.147 pi-Cation interactions: A:R.147

5 x CA: CALCIUM ION(Non-covalent)

CA.2: 6 residues within 4Å: Chain A: D.56, E.57, E.59, E.61, E.104, R.189 5 PLIP interactions: 4 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:D.56, A:E.57, A:E.61, A:E.104, H2O.148 CA.3: 5 residues within 4Å: Chain A: S.50, D.51, E.57, E.59 Ligands: CA.39 5 PLIP interactions: 4 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:S.50, A:D.51, A:E.57, A:E.59, H2O.151 CA.4: 3 residues within 4Å: Chain A: S.7, Y.9, E.14 5 PLIP interactions: 3 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:S.7, A:Y.9, A:E.14, H2O.146, H2O.262 CA.5: 3 residues within 4Å: Chain A: Y.5, D.291, E.292 5 PLIP interactions: 3 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:Y.5, A:D.291, A:E.292, H2O.54, H2O.266 CA.39: 5 residues within 4Å: Chain A: D.51, E.57, E.59, N.101 Ligands: CA.3 5 PLIP interactions: 3 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:D.51, A:E.59, A:N.101, H2O.264, H2O.269

3 x SO4: SULFATE ION(Non-functional Binders)

SO4.6: 5 residues within 4Å: Chain A: R.183, N.187, W.264, Q.268 Ligands: GOL.30 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:N.187, A:W.264 Water bridges: A:Q.268, A:Q.268 SO4.7: 3 residues within 4Å: Chain A: H.10, K.18 Ligands: GOL.14 3 PLIP interactions: 3 interactions with chain A Water bridges: A:K.18 Salt bridges: A:H.10, A:K.18 SO4.17: 5 residues within 4Å: Chain A: V.16, N.20, K.32, W.45 Ligands: GOL.19 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:N.20 Salt bridges: A:K.32

29 x GOL: GLYCEROL(Non-functional Binders)

GOL.8: 5 residues within 4Å: Chain A: Y.81, S.299, K.302 Ligands: GOL.21, GOL.23 Ligand excluded by PLIP GOL.9: 3 residues within 4Å: Chain A: T.239, Q.242, T.243 Ligand excluded by PLIP GOL.10: 3 residues within 4Å: Chain A: Y.125, S.127, Y.288 Ligand excluded by PLIP GOL.11: 3 residues within 4Å: Chain A: W.153, R.171, S.172 Ligand excluded by PLIP GOL.12: 4 residues within 4Å: Chain A: Y.118, W.128, R.132, V.141 Ligand excluded by PLIP GOL.13: 3 residues within 4Å: Chain A: R.71, E.166 Ligands: GOL.16 Ligand excluded by PLIP GOL.14: 8 residues within 4Å: Chain A: H.10, K.18, E.77, L.80, Y.81, D.84, I.294 Ligands: SO4.7 Ligand excluded by PLIP GOL.15: 8 residues within 4Å: Chain A: T.205, Y.206, S.207, L.254, Y.255, E.277, F.287 Ligands: CXA.1 Ligand excluded by PLIP GOL.16: 7 residues within 4Å: Chain A: K.126, S.127, W.128, R.129, E.166 Ligands: GOL.13, GOL.28 Ligand excluded by PLIP GOL.18: 6 residues within 4Å: Chain A: V.190, G.193, K.194, Q.195, Q.268, H.269 Ligand excluded by PLIP GOL.19: 5 residues within 4Å: Chain A: N.13, V.16, N.17, N.20 Ligands: SO4.17 Ligand excluded by PLIP GOL.21: 5 residues within 4Å: Chain A: N.89, D.93, I.96, K.302 Ligands: GOL.8 Ligand excluded by PLIP GOL.22: 3 residues within 4Å: Chain A: S.4, Y.5 Ligands: GOL.26 Ligand excluded by PLIP GOL.23: 5 residues within 4Å: Chain A: Y.81, L.85, Q.88, N.89 Ligands: GOL.8 Ligand excluded by PLIP GOL.24: 6 residues within 4Å: Chain A: R.103, E.310, K.311, D.313, C.314, S.317 Ligand excluded by PLIP GOL.25: 3 residues within 4Å: Chain A: E.40, Y.118, R.132 Ligand excluded by PLIP GOL.26: 4 residues within 4Å: Chain A: P.3, S.4, Y.5 Ligands: GOL.22 Ligand excluded by PLIP GOL.27: 5 residues within 4Å: Chain A: K.31, F.33, K.48, Y.106, R.189 Ligand excluded by PLIP GOL.28: 2 residues within 4Å: Chain A: K.126 Ligands: GOL.16 Ligand excluded by PLIP GOL.29: 5 residues within 4Å: Chain A: G.157, G.158, S.159, S.160, T.167 Ligand excluded by PLIP GOL.30: 5 residues within 4Å: Chain A: G.150, A.173, F.174, W.264 Ligands: SO4.6 Ligand excluded by PLIP GOL.31: 2 residues within 4Å: Chain A: T.226, Q.227 Ligand excluded by PLIP GOL.32: 4 residues within 4Å: Chain A: L.209, Q.249, D.253, L.254 Ligand excluded by PLIP GOL.33: 5 residues within 4Å: Chain A: N.58, E.59, P.60, N.102, D.313 Ligand excluded by PLIP GOL.34: 5 residues within 4Å: Chain A: F.174, S.175, A.176, P.177, A.180 Ligand excluded by PLIP GOL.35: 4 residues within 4Å: Chain A: N.25, P.27, N.28 Ligands: GOL.38 Ligand excluded by PLIP GOL.36: 2 residues within 4Å: Chain A: E.40, G.41 Ligand excluded by PLIP GOL.37: 2 residues within 4Å: Chain A: V.191, G.192 Ligand excluded by PLIP GOL.38: 2 residues within 4Å: Chain A: N.28 Ligands: GOL.35 Ligand excluded by PLIP

1 x ZN: ZINC ION(Non-covalent)

ZN.20: 5 residues within 4Å: Chain A: H.69, E.72, H.204, T.205 Ligands: CXA.1 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:H.69, A:E.72, A:E.72, A:H.204

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kuznetsov, S.A. et al., Carboxypeptidase T with N-sulfamoyl-L-phenylalanine. TO BE PUBLISHED

Release Date

2013-02-06

Peptides

Carboxypeptidase T: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Carboxypeptidase T

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