SMTL ID : 4dkx.1 (1 other biounit)

Crystal Structure of the Rab 6A'(Q72L)

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.90 Å

Oligo State

monomer

Ligands

1 x GDP: GUANOSINE-5'-DIPHOSPHATE(Non-covalent)

GDP.1: 17 residues within 4Å: Chain A: Q.22, S.23, V.24, G.25, K.26, T.27, S.28, F.38, D.39, N.126, K.127, D.129, L.130, S.156, A.157, K.158 Ligands: MG.2 24 PLIP interactions: 24 interactions with chain A Hydrogen bonds: A:S.23, A:V.24, A:G.25, A:K.26, A:T.27, A:T.27, A:S.28, A:S.28, A:D.39, A:N.126, A:K.127, A:K.127, A:S.156, A:A.157, A:K.158 Water bridges: A:K.26, A:T.27, A:T.27, A:D.68, A:K.158 Salt bridges: A:K.26, A:D.129 pi-Stacking: A:F.38, A:F.38

1 x MG: MAGNESIUM ION(Non-covalent)

MG.2: 2 residues within 4Å: Chain A: T.27 Ligands: GDP.1 4 PLIP interactions: 1 interactions with chain A, 3 Ligand-Water interactions Metal complexes: A:T.27, H2O.5, H2O.5, H2O.5

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Shin, Y.-C. et al., Crystal structure of Rab6A'(Q72L) mutant reveals unexpected GDP/Mg2+ binding with opened GTP-binding domain. Biochem.Biophys.Res.Commun. (2012)

Release Date

2012-10-17

Peptides

Ras-related protein Rab-6A: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Ras-related protein Rab-6A

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