SMTL ID : 4dou.1

Crystal Structure of a Single-chain Trimer of Human Adiponectin Globular Domain

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

monomer

Ligands

3 x CA: CALCIUM ION(Non-covalent)

CA.1: 6 residues within 4Å: Chain A: D.242, Q.243, D.250, N.389, V.390, D.391 5 PLIP interactions: 5 interactions with chain A Metal complexes: A:D.242, A:Q.243, A:D.250, A:V.390, A:D.391 CA.2: 6 residues within 4Å: Chain A: N.107, V.108, D.109, D.383, Q.384, D.391 5 PLIP interactions: 5 interactions with chain A Metal complexes: A:V.108, A:D.109, A:D.383, A:Q.384, A:D.391 CA.3: 6 residues within 4Å: Chain A: D.101, Q.102, D.109, N.248, V.249, D.250 5 PLIP interactions: 5 interactions with chain A Metal complexes: A:D.101, A:Q.102, A:D.109, A:V.249, A:D.250

1 x NA: SODIUM ION(Non-functional Binders)

NA.4: 3 residues within 4Å: Chain A: Q.110, Q.251, Q.392 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:Q.110, A:Q.110, A:Q.251, A:Q.392

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.5: 5 residues within 4Å: Chain A: M.324, P.325, K.345, D.375, W.408 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:K.345, A:D.375

5 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.6: 6 residues within 4Å: Chain A: Y.295, Y.307, L.434, L.435, Y.436, H.437 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:H.437, A:H.437 Water bridges: A:L.294, A:Y.307, A:L.435 EDO.7: 5 residues within 4Å: Chain A: K.91, L.117, H.118, F.191, Y.192 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:K.91, A:H.118, A:F.191 EDO.8: 0 residues within 4Å: (No contacts) 3 PLIP interactions: 3 interactions with chain A Water bridges: A:M.183, A:M.183, A:M.183 EDO.9: 3 residues within 4Å: Chain A: Y.363, V.390, Y.421 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:Y.421, A:Y.421 Water bridges: A:Q.243, A:V.390 EDO.10: 2 residues within 4Å: Chain A: V.129, Y.130 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:Y.130

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Min, X. et al., Crystal structure of a single-chain trimer of human adiponectin globular domain. Febs Lett. (2012)

Release Date

2012-02-29

Peptides

Adiponectin: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Adiponectin