SMTL ID : 4dpu.1 (1 other biounit)

Crystal structure of Staphylococcus epidermidis S192A mevalonate diphosphate decarboxylase complexed with inhibitor 6-FMVAPP and ATPgS

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.90 Å

Oligo State

monomer

Ligands

1 x FM0: (3R)-3-(fluoromethyl)-3-hydroxy-5-{[(S)-hydroxy(phosphonooxy)phosphoryl]oxy}pentanoic acid(Non-covalent)

FM0.1: 15 residues within 4Å: Chain A: A.19, Y.23, W.24, K.26, S.112, S.144, G.145, S.146, R.149, A.197, R.198, M.201, D.288, A.289 Ligands: AGS.2 18 PLIP interactions: 18 interactions with chain A Hydrophobic interactions: A:A.19 Hydrogen bonds: A:Y.23, A:Y.23, A:Y.23, A:S.112, A:G.145, A:S.146, A:S.146, A:S.146 Water bridges: A:A.19, A:A.197, A:R.198, A:R.198, A:R.198, A:A.289 Salt bridges: A:K.26, A:R.149, A:R.198

1 x AGS: PHOSPHOTHIOPHOSPHORIC ACID-ADENYLATE ESTER(Non-covalent)

AGS.2: 14 residues within 4Å: Chain A: T.48, L.65, E.74, K.77, S.99, N.101, A.110, S.111, S.112, A.113, A.115, S.144, S.146 Ligands: FM0.1 14 PLIP interactions: 14 interactions with chain A Hydrogen bonds: A:E.74, A:K.77, A:S.99, A:N.101, A:N.101, A:S.111, A:S.111, A:S.112, A:S.112, A:S.144 Water bridges: A:A.197, A:A.197, A:A.197, A:A.197

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Barta, M.L. et al., Structural basis for nucleotide binding and reaction catalysis in mevalonate diphosphate decarboxylase. Biochemistry (2012)

Release Date

2012-07-11

Peptides

Mevalonate diphosphate decarboxylase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Mevalonate diphosphate decarboxylase

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