SMTL ID : 4dpx.2 (1 other biounit)

Crystal structure of S192A Staphylococcus epidermidis mevalonate diphosphate decarboxylase

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.95 Å

Oligo State

monomer

Ligands

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.1: 4 residues within 4Å: Chain A: I.188, N.189, N.190, S.192 7 PLIP interactions: 7 interactions with chain A Hydrogen bonds: A:N.189, A:N.190, A:N.190, A:N.190, A:S.192 Water bridges: A:A.107, A:I.188

3 x FMT: FORMIC ACID(Non-functional Binders)

FMT.2: 4 residues within 4Å: Chain A: Y.23, S.146, M.201 Ligands: FMT.3 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:S.146 Water bridges: A:S.146 FMT.3: 5 residues within 4Å: Chain A: N.17, S.146, R.149 Ligands: FMT.2, FMT.4 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:S.146, A:S.146, A:R.149 Water bridges: A:A.19, A:A.113, A:D.288 FMT.4: 7 residues within 4Å: Chain A: T.16, A.110, S.111, S.112, A.113, S.114 Ligands: FMT.3 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:A.113, A:S.114

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Barta, M.L. et al., Structural basis for nucleotide binding and reaction catalysis in mevalonate diphosphate decarboxylase. Biochemistry (2012)

Release Date

2012-07-11

Peptides

Mevalonate diphosphate decarboxylase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

Mevalonate diphosphate decarboxylase

Related Entries With Identical Sequence