SMTL ID : 4dr9.1 (3 other biounits)

Crystal structure of a peptide deformylase from synechococcus elongatus in complex with actinonin

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.90 Å

Oligo State

monomer

Ligands

1 x ZN: ZINC ION(Non-covalent)

ZN.1: 5 residues within 4Å: Chain A: Q.66, C.109, H.151, H.155 Ligands: BB2.3 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:C.109, A:H.151, A:H.155

1 x BR: BROMIDE ION(Non-covalent)

BR.2: 2 residues within 4Å: Chain A: A.184, R.186 Ligand excluded by PLIP

1 x BB2: ACTINONIN(Non-covalent)

BB2.3: 15 residues within 4Å: Chain A: G.59, I.60, G.61, Q.66, Q.106, E.107, G.108, C.109, L.110, L.144, R.147, H.151, E.152, H.155 Ligands: ZN.1 11 PLIP interactions: 11 interactions with chain A Hydrophobic interactions: A:I.60, A:E.107, A:L.110, A:L.144, A:R.147 Hydrogen bonds: A:I.60, A:Q.66, A:G.108, A:G.108, A:L.110, A:E.152

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Frank, J.A. et al., Structure and function of a cyanophage-encoded peptide deformylase. ISME J (2013)

Release Date

2013-01-16

Peptides

Peptide deformylase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Peptide deformylase

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