- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.10 Å
- Oligo State
- homo-dimer
- Ligands
- 2 x IPE: 3-METHYLBUT-3-ENYL TRIHYDROGEN DIPHOSPHATE(Non-covalent)
- 4 x SO4: SULFATE ION(Non-functional Binders)
SO4.2: 3 residues within 4Å:- Chain A: F.17, Q.21, H.141
3 PLIP interactions:3 interactions with chain A- Hydrogen bonds: A:Q.21
- Salt bridges: A:K.25, A:H.141
SO4.3: 4 residues within 4Å:- Chain A: R.237, E.331, S.334, L.335
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:S.334
- Salt bridges: A:R.237
SO4.11: 3 residues within 4Å:- Chain B: F.17, Q.21, H.141
3 PLIP interactions:3 interactions with chain B- Hydrogen bonds: B:Q.21
- Salt bridges: B:K.25, B:H.141
SO4.12: 4 residues within 4Å:- Chain B: R.237, E.331, S.334, L.335
2 PLIP interactions:2 interactions with chain B- Hydrogen bonds: B:S.334
- Salt bridges: B:R.237
- 2 x ACT: ACETATE ION(Non-functional Binders)
- 2 x NA: SODIUM ION(Non-functional Binders)
NA.5: 4 residues within 4Å:- Chain A: I.129, K.132, S.133
- Chain B: K.132
3 PLIP interactions:1 interactions with chain B, 2 interactions with chain A- Water bridges: B:K.132, A:H.93
- Hydrogen bonds: A:S.133
NA.14: 4 residues within 4Å:- Chain A: K.132
- Chain B: I.129, K.132, S.133
2 PLIP interactions:1 interactions with chain A, 1 interactions with chain B- Hydrogen bonds: A:K.132, B:S.133
- 6 x MG: MAGNESIUM ION(Non-covalent)
MG.6: 6 residues within 4Å:- Chain A: D.98, D.102, Q.167, D.170
- Ligands: MG.7, 0M7.9
5 PLIP interactions:2 interactions with chain A, 3 Ligand-Water interactions- Metal complexes: A:D.98, A:D.102, H2O.1, H2O.1, H2O.1
MG.7: 4 residues within 4Å:- Chain A: D.98, D.102
- Ligands: MG.6, 0M7.9
4 PLIP interactions:2 interactions with chain A, 2 Ligand-Water interactions- Metal complexes: A:D.98, A:D.102, H2O.1, H2O.1
MG.8: 3 residues within 4Å:- Chain A: D.250, D.254
- Ligands: 0M7.9
4 PLIP interactions:1 interactions with chain A, 3 Ligand-Water interactions- Metal complexes: A:D.250, H2O.1, H2O.1, H2O.1
MG.15: 6 residues within 4Å:- Chain B: D.98, D.102, Q.167, D.170
- Ligands: MG.16, 0M7.18
5 PLIP interactions:2 interactions with chain B, 3 Ligand-Water interactions- Metal complexes: B:D.98, B:D.102, H2O.4, H2O.4, H2O.5
MG.16: 4 residues within 4Å:- Chain B: D.98, D.102
- Ligands: MG.15, 0M7.18
4 PLIP interactions:2 interactions with chain B, 2 Ligand-Water interactions- Metal complexes: B:D.98, B:D.102, H2O.4, H2O.4
MG.17: 3 residues within 4Å:- Chain B: D.250, D.254
- Ligands: 0M7.18
4 PLIP interactions:1 interactions with chain B, 3 Ligand-Water interactions- Metal complexes: B:D.250, H2O.4, H2O.4, H2O.4
- 2 x 0M7: [2-(pentylamino)ethane-1,1-diyl]bis(phosphonic acid)(Non-covalent)
0M7.9: 16 residues within 4Å:- Chain A: Y.94, L.95, D.98, D.102, R.107, T.163, Q.167, K.207, Y.211, Q.247, D.250, K.264
- Ligands: IPE.1, MG.6, MG.7, MG.8
10 PLIP interactions:10 interactions with chain A- Hydrophobic interactions: A:Y.94, A:T.163, A:Y.211
- Hydrogen bonds: A:R.107, A:R.107, A:Q.247, A:Q.247
- Water bridges: A:Q.167, A:K.264, A:K.264
0M7.18: 16 residues within 4Å:- Chain B: Y.94, L.95, D.98, D.102, R.107, T.163, Q.167, K.207, Y.211, Q.247, D.250, K.264
- Ligands: IPE.10, MG.15, MG.16, MG.17
11 PLIP interactions:11 interactions with chain B- Hydrophobic interactions: B:Y.94, B:T.163, B:Y.211
- Hydrogen bonds: B:R.107, B:R.107, B:Q.247, B:Q.247
- Water bridges: B:Q.167, B:D.254, B:K.264, B:K.264
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Aripirala, S. et al., Design, synthesis, calorimetry, and crystallographic analysis of 2-alkylaminoethyl-1,1-bisphosphonates as inhibitors of Trypanosoma cruzi farnesyl diphosphate synthase. J.Med.Chem. (2012)
- Release Date
- 2013-01-16
- Peptides
- Farnesyl pyrophosphate synthase: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
A
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.10 Å
- Oligo State
- homo-dimer
- Ligands
- 2 x IPE: 3-METHYLBUT-3-ENYL TRIHYDROGEN DIPHOSPHATE(Non-covalent)
- 4 x SO4: SULFATE ION(Non-functional Binders)
- 2 x ACT: ACETATE ION(Non-functional Binders)
- 2 x NA: SODIUM ION(Non-functional Binders)
- 6 x MG: MAGNESIUM ION(Non-covalent)
- 2 x 0M7: [2-(pentylamino)ethane-1,1-diyl]bis(phosphonic acid)(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Aripirala, S. et al., Design, synthesis, calorimetry, and crystallographic analysis of 2-alkylaminoethyl-1,1-bisphosphonates as inhibitors of Trypanosoma cruzi farnesyl diphosphate synthase. J.Med.Chem. (2012)
- Release Date
- 2013-01-16
- Peptides
- Farnesyl pyrophosphate synthase: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
A