SMTL ID : 4dwm.1

Crystal structure of the complex of type I Ribosome inactivating protein with N-acetylglucosamine at 1.62 A resolution

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.62 Å

Oligo State

monomer

Ligands

2 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)(Non-covalent)

NAG.1: 4 residues within 4Å: Chain A: T.226, N.227, T.229, S.230 7 PLIP interactions: 7 interactions with chain A Hydrogen bonds: A:T.226, A:N.227 Water bridges: A:T.226, A:N.227, A:S.230, A:N.231, A:N.231 NAG.4: 10 residues within 4Å: Chain A: V.69, Y.70, I.71, G.109, N.110, Y.111, I.155, A.159, E.160, R.163 10 PLIP interactions: 10 interactions with chain A Hydrophobic interactions: A:I.71, A:I.155, A:A.159 Hydrogen bonds: A:I.71, A:Y.111, A:R.163, A:R.163 Water bridges: A:G.109, A:N.110, A:E.112

2 x GOL: GLYCEROL(Non-functional Binders)

GOL.2: 6 residues within 4Å: Chain A: L.6, G.8, A.9, L.129, P.130, A.175 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:G.8 Water bridges: A:A.9, A:A.9 GOL.3: 4 residues within 4Å: Chain A: N.33, T.234, S.235, Q.238 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:N.33, A:I.237, A:Q.238, A:Q.238

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Yamini, S. et al., Crystal structure of the complex of type I Ribosome inactivating protein with N-acetylglucosamine at 1.62 A resolution. To be Published

Release Date

2012-03-07

Peptides

rRNA N-glycosidase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

rRNA N-glycosidase

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