SMTL ID : 4e1l.1

Crystal structure of Acetoacetyl-CoA thiolase (thlA2) from Clostridium difficile

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

homo-tetramer

Ligands

57 x IOD: IODIDE ION(Non-functional Binders)

IOD.1: 5 residues within 4Å: Chain A: G.384, G.385, G.386 Chain C: N.67, R.70 Ligand excluded by PLIP IOD.2: 3 residues within 4Å: Chain A: N.67, T.86 Chain C: K.89 Ligand excluded by PLIP IOD.3: 3 residues within 4Å: Chain A: C.91, N.320, C.382 Ligand excluded by PLIP IOD.4: 3 residues within 4Å: Chain A: N.196, F.198, K.219 Ligand excluded by PLIP IOD.5: 2 residues within 4Å: Chain A: G.45, N.47 Ligand excluded by PLIP IOD.6: 3 residues within 4Å: Chain A: K.5, D.6, Q.266 Ligand excluded by PLIP IOD.7: 2 residues within 4Å: Chain A: L.181, K.331 Ligand excluded by PLIP IOD.8: 4 residues within 4Å: Chain A: N.88, K.89 Chain C: N.88, K.89 Ligand excluded by PLIP IOD.9: 1 residues within 4Å: Chain A: T.163 Ligand excluded by PLIP IOD.10: 3 residues within 4Å: Chain A: M.227, G.231, L.232 Ligand excluded by PLIP IOD.11: 3 residues within 4Å: Chain A: T.228, F.229 Ligands: IOD.12 Ligand excluded by PLIP IOD.12: 3 residues within 4Å: Chain A: L.183, N.187 Ligands: IOD.11 Ligand excluded by PLIP IOD.13: 0 residues within 4Å: (No contacts) Ligand excluded by PLIP IOD.14: 2 residues within 4Å: Chain A: Q.335, I.336 Ligand excluded by PLIP IOD.15: 2 residues within 4Å: Chain A: K.136 Chain B: F.133 Ligand excluded by PLIP IOD.16: 2 residues within 4Å: Chain A: F.133 Chain B: K.136 Ligand excluded by PLIP IOD.17: 3 residues within 4Å: Chain B: C.91, N.320, C.382 Ligand excluded by PLIP IOD.18: 3 residues within 4Å: Chain B: G.386 Chain D: N.67, R.70 Ligand excluded by PLIP IOD.19: 4 residues within 4Å: Chain B: N.196, F.198, K.199, K.219 Ligand excluded by PLIP IOD.20: 1 residues within 4Å: Chain B: Q.31 Ligand excluded by PLIP IOD.21: 2 residues within 4Å: Chain B: K.302, K.305 Ligand excluded by PLIP IOD.22: 3 residues within 4Å: Chain B: D.6, Q.265, Q.266 Ligand excluded by PLIP IOD.23: 0 residues within 4Å: (No contacts) Ligand excluded by PLIP IOD.24: 0 residues within 4Å: (No contacts) Ligand excluded by PLIP IOD.25: 4 residues within 4Å: Chain B: E.200, Y.367, Q.370, K.371 Ligand excluded by PLIP IOD.26: 2 residues within 4Å: Chain B: S.338, S.339 Ligand excluded by PLIP IOD.27: 1 residues within 4Å: Chain B: T.163 Ligand excluded by PLIP IOD.28: 1 residues within 4Å: Chain B: Y.282 Ligand excluded by PLIP IOD.29: 4 residues within 4Å: Chain C: K.5, D.6, Q.265, Q.266 Ligand excluded by PLIP IOD.30: 3 residues within 4Å: Chain C: N.196, F.198, K.219 Ligand excluded by PLIP IOD.31: 3 residues within 4Å: Chain A: N.67 Chain C: G.384, G.386 Ligand excluded by PLIP IOD.32: 5 residues within 4Å: Chain C: C.91, N.320, A.322, L.381, C.382 Ligand excluded by PLIP IOD.33: 2 residues within 4Å: Chain C: V.30, Q.61 Ligand excluded by PLIP IOD.34: 0 residues within 4Å: (No contacts) Ligand excluded by PLIP IOD.35: 2 residues within 4Å: Chain C: K.305, K.306 Ligand excluded by PLIP IOD.36: 2 residues within 4Å: Chain C: T.34, N.75 Ligand excluded by PLIP IOD.37: 0 residues within 4Å: (No contacts) Ligand excluded by PLIP IOD.38: 1 residues within 4Å: Chain C: L.181 Ligand excluded by PLIP IOD.39: 1 residues within 4Å: Chain C: I.253 Ligand excluded by PLIP IOD.40: 3 residues within 4Å: Chain C: A.277, K.278, R.395 Ligand excluded by PLIP IOD.41: 3 residues within 4Å: Chain C: S.281, Y.282, K.306 Ligand excluded by PLIP IOD.42: 4 residues within 4Å: Chain C: E.200, Y.367, Q.370, K.371 Ligand excluded by PLIP IOD.43: 2 residues within 4Å: Chain C: M.227, G.231 Ligand excluded by PLIP IOD.44: 3 residues within 4Å: Chain D: K.5, D.6, Q.266 Ligand excluded by PLIP IOD.45: 0 residues within 4Å: (No contacts) Ligand excluded by PLIP IOD.46: 3 residues within 4Å: Chain D: C.91, N.320, C.382 Ligand excluded by PLIP IOD.47: 5 residues within 4Å: Chain B: N.67 Chain D: G.384, G.385, G.386, Q.387 Ligand excluded by PLIP IOD.48: 4 residues within 4Å: Chain B: T.86, N.88 Chain D: N.88, K.89 Ligand excluded by PLIP IOD.49: 3 residues within 4Å: Chain D: Q.31, T.34, N.75 Ligand excluded by PLIP IOD.50: 3 residues within 4Å: Chain D: S.28, V.30, Q.61 Ligand excluded by PLIP IOD.51: 3 residues within 4Å: Chain B: N.67, T.86 Chain D: K.89 Ligand excluded by PLIP IOD.52: 2 residues within 4Å: Chain D: N.196, F.198 Ligand excluded by PLIP IOD.53: 0 residues within 4Å: (No contacts) Ligand excluded by PLIP IOD.54: 1 residues within 4Å: Chain D: Q.66 Ligand excluded by PLIP IOD.55: 1 residues within 4Å: Chain D: Y.282 Ligand excluded by PLIP IOD.56: 1 residues within 4Å: Chain D: S.122 Ligand excluded by PLIP IOD.57: 0 residues within 4Å: (No contacts) Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

 - 

Release Date

2012-03-21

Peptides

Acetoacetyl-CoA thiolase 2: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

Acetoacetyl-CoA thiolase 2