SMTL ID : 4e1s.1

X-ray crystal structure of the transmembrane beta-domain from intimin from EHEC strain O157:H7

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.85 Å

Oligo State

monomer

Ligands

1 x CL: CHLORIDE ION(Non-functional Binders)

CL.1: 3 residues within 4Å: Chain A: R.126, N.128, Q.232 Ligand excluded by PLIP

10 x OLC: (2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate(Non-covalent)

OLC.2: 14 residues within 4Å: Chain A: L.10, Q.11, S.12, G.18, S.19, Y.43, Y.172, M.180, G.181, I.182, Y.196, S.197, M.198 Ligands: OLC.5 7 PLIP interactions: 7 interactions with chain A Hydrophobic interactions: A:L.10, A:Y.172, A:M.180, A:I.182, A:Y.196 Hydrogen bonds: A:S.19, A:S.19 OLC.3: 9 residues within 4Å: Chain A: G.66, G.85, G.86, V.97, G.99, F.101, F.123, Y.147 Ligands: OLC.9 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:V.97, A:F.101, A:F.101 OLC.5: 9 residues within 4Å: Chain A: V.8, S.19, S.20, A.41, R.42, Y.43 Ligands: OLC.2, OLB.8, OLC.14 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:V.8, A:A.41 OLC.6: 5 residues within 4Å: Chain A: F.27, Y.28 Ligands: OLB.4, OLC.11, OLC.13 1 PLIP interactions: 1 interactions with chain A Hydrophobic interactions: A:F.27 OLC.7: 11 residues within 4Å: Chain A: R.90, D.91, Y.92, G.129, Y.130, L.131, P.132, L.137, G.138, A.139, V.170 8 PLIP interactions: 8 interactions with chain A Hydrophobic interactions: A:Y.92, A:L.131, A:L.137, A:L.137, A:V.170 Hydrogen bonds: A:D.91 Water bridges: A:R.90 Salt bridges: A:R.90 OLC.9: 5 residues within 4Å: Chain A: V.97, F.123, Y.147 Ligands: OLC.3, OLB.10 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:V.97, A:F.123 OLC.11: 11 residues within 4Å: Chain A: L.25, P.26, F.27, G.37, L.52, G.53, A.54, I.71 Ligands: OLB.4, OLC.6, OLC.12 7 PLIP interactions: 7 interactions with chain A Hydrophobic interactions: A:L.25, A:F.27, A:L.52, A:A.54, A:I.71 Water bridges: A:D.29, A:D.29 OLC.12: 3 residues within 4Å: Chain A: L.25 Ligands: OLC.11, OLC.14 1 PLIP interactions: 1 interactions with chain A Hydrophobic interactions: A:L.25 OLC.13: 7 residues within 4Å: Chain A: Y.28, S.30, M.33, Q.56, Y.67 Ligands: OLB.4, OLC.6 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:Y.28, A:S.30 Water bridges: A:K.32 OLC.14: 9 residues within 4Å: Chain A: H.2, F.23, V.39, G.40, A.41, A.50, F.204 Ligands: OLC.5, OLC.12 7 PLIP interactions: 7 interactions with chain A Hydrophobic interactions: A:F.23, A:F.23, A:V.39, A:A.41, A:A.50 Water bridges: A:Y.202, A:F.204

3 x OLB: (2S)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate(Non-covalent)

OLB.4: 8 residues within 4Å: Chain A: F.27, Y.28, M.33, Q.56, Y.67 Ligands: OLC.6, OLC.11, OLC.13 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:F.27, A:Q.56 OLB.8: 5 residues within 4Å: Chain A: A.6, V.8, F.200, Y.202 Ligands: OLC.5 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:V.8, A:F.200, A:Y.202 OLB.10: 9 residues within 4Å: Chain A: Y.88, S.95, V.97, F.123, I.125, Q.145, Y.147, N.162 Ligands: OLC.9 5 PLIP interactions: 5 interactions with chain A Hydrophobic interactions: A:Y.88, A:V.97, A:F.123, A:I.125 Hydrogen bonds: A:N.162

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Fairman, J.W. et al., Crystal Structures of the Outer Membrane Domain of Intimin and Invasin from Enterohemorrhagic E. coli and Enteropathogenic Y. pseudotuberculosis. Structure (2012)

Release Date

2012-06-13

Peptides

Intimin: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Membrane

We predict this structure to be a membrane protein.
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Intimin

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