SMTL ID : 4e1t.1

X-ray crystal structure of the transmembrane beta-domain from invasin from Yersinia pseudotuberculosis

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.26 Å

Oligo State

monomer

Ligands

12 x OLC: (2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate(Non-covalent)

OLC.1: 8 residues within 4Å: Chain A: L.42, L.53, N.76, D.77, H.81, H.83 Ligands: OLC.4, OLC.9 5 PLIP interactions: 5 interactions with chain A Hydrophobic interactions: A:L.42, A:L.53 Hydrogen bonds: A:N.76 Salt bridges: A:H.81, A:H.83 OLC.2: 5 residues within 4Å: Chain A: T.72, L.87, F.104, R.105 Ligands: OLC.11 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:T.72, A:L.87, A:L.87 Hydrogen bonds: A:R.105 OLC.3: 5 residues within 4Å: Chain A: W.66, Y.68, L.98, Y.146 Ligands: OLB.5 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:W.66, A:L.98, A:Y.146 Hydrogen bonds: A:Y.68 OLC.4: 3 residues within 4Å: Chain A: W.30 Ligands: OLC.1, OLC.9 1 PLIP interactions: 1 interactions with chain A Hydrophobic interactions: A:W.30 OLC.6: 9 residues within 4Å: Chain A: W.66, T.93, D.94, Y.95, A.132, Y.133, P.135, G.142, I.173 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:T.93, A:Y.95, A:A.132 Hydrogen bonds: A:T.93 OLC.7: 11 residues within 4Å: Chain A: A.130, A.132, G.142, K.143, L.144, A.171, G.172, I.173, V.185, D.186, Q.187 6 PLIP interactions: 6 interactions with chain A Hydrophobic interactions: A:A.130, A:A.132, A:L.144, A:I.173, A:V.185, A:Q.187 OLC.8: 7 residues within 4Å: Chain A: A.7, V.9, L.180, M.203, Y.205, S.210, F.211 11 PLIP interactions: 11 interactions with chain A Hydrophobic interactions: A:A.7, A:V.9, A:L.180, A:M.203, A:Y.205, A:Y.205, A:F.211, A:F.211 Hydrogen bonds: A:Y.205, A:F.211 Water bridges: A:Q.212 OLC.9: 14 residues within 4Å: Chain A: F.4, W.26, A.28, P.29, W.30, F.38, S.40, Q.41, L.42, L.55, G.56, V.57 Ligands: OLC.1, OLC.4 5 PLIP interactions: 5 interactions with chain A Hydrophobic interactions: A:W.26, A:F.38, A:L.42, A:L.55, A:V.57 OLC.10: 12 residues within 4Å: Chain A: V.9, L.19, K.20, E.21, S.22, S.23, L.24, I.44, R.45, N.46, N.51 Ligands: OLC.13 7 PLIP interactions: 7 interactions with chain A Hydrophobic interactions: A:V.9, A:I.44, A:N.46 Hydrogen bonds: A:L.19, A:S.22, A:S.22, A:N.46 OLC.11: 7 residues within 4Å: Chain A: F.104, R.105, W.109, R.121, Q.245 Ligands: OLC.2, OLC.12 5 PLIP interactions: 5 interactions with chain A Hydrophobic interactions: A:F.104, A:F.104 Hydrogen bonds: A:Q.245 Salt bridges: A:R.105, A:R.121 OLC.12: 11 residues within 4Å: Chain A: L.70, L.87, G.88, A.89, A.100, N.101, G.102, G.126, D.127, L.128 Ligands: OLC.11 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:L.70, A:A.89, A:L.128 OLC.13: 4 residues within 4Å: Chain A: N.46, S.49, N.51 Ligands: OLC.10 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:N.46, A:S.49, A:N.51

1 x OLB: (2S)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate(Non-covalent)

OLB.5: 12 residues within 4Å: Chain A: F.36, T.61, Y.68, G.69, L.70, A.89, E.90, L.128, R.129, L.144, M.145 Ligands: OLC.3 5 PLIP interactions: 5 interactions with chain A Hydrophobic interactions: A:Y.68, A:L.70, A:A.89 Water bridges: A:T.61, A:T.61

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Fairman, J.W. et al., Crystal Structures of the Outer Membrane Domain of Intimin and Invasin from Enterohemorrhagic E. coli and Enteropathogenic Y. pseudotuberculosis. Structure (2012)

Release Date

2012-06-13

Peptides

Invasin: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Membrane

We predict this structure to be a membrane protein.
Show / Hide

Invasin