SMTL ID : 4e1v.2 (1 other biounit)

X-RAY Structure of the Uridine Phosphorylase from Salmonella Typhimurium in Complex with 5-Fluorouracil at 2.15 A Resolution

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.15 Å

Oligo State

homo-hexamer

Ligands

4 x URF: 5-FLUOROURACIL(Non-covalent)

URF.1: 12 residues within 4Å: Chain A: T.94, T.95, G.96, F.162, Q.166, R.168, Y.195, E.196, M.197, I.220, V.221, P.229 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:T.94, A:Q.166, A:Q.166, A:R.168, A:R.168 URF.2: 10 residues within 4Å: Chain C: T.94, T.95, G.96, F.162, Q.166, R.168, M.197, I.220, V.221, P.229 6 PLIP interactions: 6 interactions with chain C Hydrogen bonds: C:Q.166, C:Q.166, C:R.168, C:R.168 Water bridges: C:T.94, C:T.94 URF.3: 12 residues within 4Å: Chain D: T.94, T.95, G.96, F.162, Q.166, R.168, Y.195, E.196, M.197, I.220, V.221, P.229 7 PLIP interactions: 7 interactions with chain D Hydrogen bonds: D:T.94, D:Q.166, D:Q.166, D:R.168, D:R.168 Water bridges: D:T.94, D:T.94 URF.4: 10 residues within 4Å: Chain F: T.94, T.95, G.96, F.162, Q.166, R.168, M.197, I.220, V.221, P.229 6 PLIP interactions: 6 interactions with chain F Hydrogen bonds: F:Q.166, F:Q.166, F:R.168, F:R.168 Water bridges: F:T.94, F:T.94

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Lashkov, A.A. et al., X-ray structure of Salmonella typhimurium uridine phosphorylase complexed with 5-fluorouracil and molecular modelling of the complex of 5-fluorouracil with uridine phosphorylase from Vibrio cholerae. Acta Crystallogr.,Sect.D (2012)

Release Date

2013-03-06

Peptides

Uridine phosphorylase: ABCDEF

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
H

B
I

C
G

D
H

E
I

F
G

Uridine phosphorylase

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