SMTL ID : 4e27.1

Crystal Structure of a Pentameric Capsid Protein Isolated from Metagenomic Phage Sequences Solved by Iodide SAD Phasing

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.40 Å

Oligo State

homo-pentamer

Ligands

28 x IOD: IODIDE ION(Non-functional Binders)

IOD.1: 3 residues within 4Å: Chain A: V.142, A.143, V.168 Ligand excluded by PLIP IOD.2: 1 residues within 4Å: Chain C: Q.129 Ligand excluded by PLIP IOD.3: 4 residues within 4Å: Chain A: Q.52, R.53, E.54 Chain E: R.53 Ligand excluded by PLIP IOD.4: 2 residues within 4Å: Chain A: L.62 Chain C: T.110 Ligand excluded by PLIP IOD.5: 1 residues within 4Å: Chain A: G.124 Ligand excluded by PLIP IOD.6: 3 residues within 4Å: Chain A: F.4, R.5, S.32 Ligand excluded by PLIP IOD.7: 3 residues within 4Å: Chain A: S.97, G.98, A.99 Ligand excluded by PLIP IOD.8: 2 residues within 4Å: Chain A: A.51 Chain C: K.140 Ligand excluded by PLIP IOD.9: 1 residues within 4Å: Chain B: A.143 Ligand excluded by PLIP IOD.10: 2 residues within 4Å: Chain B: Q.52, Q.57 Ligand excluded by PLIP IOD.11: 2 residues within 4Å: Chain B: G.98, A.99 Ligand excluded by PLIP IOD.12: 1 residues within 4Å: Chain B: L.62 Ligand excluded by PLIP IOD.14: 1 residues within 4Å: Chain C: A.143 Ligand excluded by PLIP IOD.15: 2 residues within 4Å: Chain C: L.62 Chain D: T.110 Ligand excluded by PLIP IOD.16: 2 residues within 4Å: Chain C: E.45, Q.52 Ligand excluded by PLIP IOD.17: 1 residues within 4Å: Chain C: G.98 Ligand excluded by PLIP IOD.18: 1 residues within 4Å: Chain D: A.143 Ligand excluded by PLIP IOD.19: 3 residues within 4Å: Chain D: Q.52, Q.57, P.175 Ligand excluded by PLIP IOD.20: 0 residues within 4Å: (No contacts) Ligand excluded by PLIP IOD.21: 1 residues within 4Å: Chain B: T.110 Ligand excluded by PLIP IOD.22: 1 residues within 4Å: Chain D: D.55 Ligand excluded by PLIP IOD.23: 2 residues within 4Å: Chain D: G.98, A.99 Ligand excluded by PLIP IOD.24: 4 residues within 4Å: Chain D: T.106, D.107, G.108, T.146 Ligand excluded by PLIP IOD.25: 2 residues within 4Å: Chain E: A.143, V.168 Ligand excluded by PLIP IOD.26: 3 residues within 4Å: Chain E: Q.52, Q.57, P.175 Ligand excluded by PLIP IOD.27: 4 residues within 4Å: Chain B: R.53 Chain E: Q.52, E.54, L.172 Ligand excluded by PLIP IOD.28: 2 residues within 4Å: Chain A: K.112 Chain E: L.62 Ligand excluded by PLIP IOD.29: 3 residues within 4Å: Chain E: S.97, G.98, A.99 Ligand excluded by PLIP

1 x NA: SODIUM ION(Non-functional Binders)

NA.13: 4 residues within 4Å: Chain B: E.95 Chain D: E.71, A.154, R.157 2 PLIP interactions: 1 interactions with chain B, 1 interactions with chain D Hydrogen bonds: B:E.95, D:R.157

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Craig, T.K. et al., Crystal Structure of a Pentameric Capsid Protein Isolated from Metagenomic Phage Sequences Solved by Iodide SAD Phasing. To be Published

Release Date

2013-03-27

Peptides

Capsid Protein: ABCDE

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

E
E

Capsid Protein