SMTL ID : 4e2k.1

The structure of the S. aureus DnaG RNA Polymerase Domain

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.15 Å

Oligo State

monomer

Ligands

2 x BEN: BENZAMIDINE(Non-functional Binders)

BEN.1: 3 residues within 4Å: Chain A: E.17, F.18, Y.21 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:E.17, A:F.18 Water bridges: A:Y.21 BEN.2: 6 residues within 4Å: Chain A: Q.182, L.183, S.184, D.185, K.214, H.218 7 PLIP interactions: 7 interactions with chain A Hydrophobic interactions: A:Q.182, A:K.214, A:H.218 Hydrogen bonds: A:L.183, A:D.185 Water bridges: A:D.185 pi-Stacking: A:H.218

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Rymer, R.U. et al., Binding Mechanism of Metal-NTP Substrates and Stringent-Response Alarmones to Bacterial DnaG-Type Primases. Structure (2012)

Release Date

2012-08-01

Peptides

DNA primase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

DNA primase

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