SMTL ID : 4e3k.1 (1 other biounit)

Crystal structure of AmpC beta-lactamase in complex with a designed 4-tetrazolyl pyridine sulfonamide boronic acid inhibitor

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.43 Å

Oligo State

monomer

Ligands

1 x 0NA: [({[6-(1H-tetrazol-5-yl)pyridin-3-yl]sulfonyl}amino)methyl]boronic acid(Covalent)

0NA.1: 14 residues within 4Å: Chain A: G.60, S.61, K.64, L.116, Q.117, Y.147, N.149, V.208, S.209, Y.218, G.314, A.315, T.316, G.317 14 PLIP interactions: 14 interactions with chain A Hydrophobic interactions: A:Y.218, A:Y.218 Hydrogen bonds: A:S.61, A:Y.147, A:N.149, A:S.209, A:A.315, A:A.315, A:G.317 Water bridges: A:S.209, A:S.209, A:Y.218, A:G.318, A:G.318

2 x PO4: PHOSPHATE ION(Non-functional Binders)

PO4.2: 1 residues within 4Å: Chain A: H.183 6 PLIP interactions: 6 interactions with chain A Water bridges: A:H.183, A:H.183, A:E.192, A:E.192, A:E.192 Salt bridges: A:H.183 PO4.3: 2 residues within 4Å: Chain A: F.38, T.39 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:T.39, A:T.39

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Eidam, O. et al., Fragment-guided design of subnanomolar beta-lactamase inhibitors active in vivo. Proc.Natl.Acad.Sci.USA (2012)

Release Date

2012-09-26

Peptides

Beta-lactamase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Beta-lactamase

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