SMTL ID : 4ee8.1

Crystal structure of the Novel Phenazine Prenyltransferase EpzP (wildtype)

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.93 Å

Oligo State

monomer

Ligands

7 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 9 residues within 4Å: Chain A: R.51, R.64, K.119, W.121, N.174, Y.176, Y.222, K.285 Ligands: SO4.2 11 PLIP interactions: 11 interactions with chain A Hydrogen bonds: A:R.64, A:N.174, A:Y.222, A:Y.222 Water bridges: A:R.51, A:R.51, A:K.119, A:K.285 Salt bridges: A:R.51, A:K.119, A:K.285 SO4.2: 8 residues within 4Å: Chain A: R.51, S.57, K.119, K.170, R.234, Y.283, K.285 Ligands: SO4.1 9 PLIP interactions: 9 interactions with chain A Hydrogen bonds: A:S.57, A:R.234 Water bridges: A:K.119, A:K.119, A:D.167 Salt bridges: A:R.51, A:K.119, A:K.170, A:K.285 SO4.3: 4 residues within 4Å: Chain A: R.234, T.278, P.279, K.280 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:R.234 SO4.4: 3 residues within 4Å: Chain A: S.133, E.134, K.137 4 PLIP interactions: 4 interactions with chain A Water bridges: A:K.137, A:K.137, A:K.137 Salt bridges: A:K.137 SO4.5: 5 residues within 4Å: Chain A: K.86, T.87, D.88, H.89, R.171 7 PLIP interactions: 7 interactions with chain A Hydrogen bonds: A:T.87, A:D.88, A:H.89 Water bridges: A:R.171, A:R.171, A:R.171 Salt bridges: A:R.171 SO4.6: 3 residues within 4Å: Chain A: S.229, P.230, K.231 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:S.229 Salt bridges: A:K.231 SO4.7: 3 residues within 4Å: Chain A: W.292, Q.293, K.294 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:Q.293, A:K.294 Water bridges: A:R.295

1 x CL: CHLORIDE ION(Non-functional Binders)

CL.8: 1 residues within 4Å: Chain A: K.70 Ligand excluded by PLIP

1 x ACT: ACETATE ION(Non-functional Binders)

ACT.9: 1 residues within 4Å: Chain A: R.77 2 PLIP interactions: 2 interactions with chain A Water bridges: A:D.73 Salt bridges: A:R.77

1 x EPE: 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID(Non-functional Binders)

EPE.10: 5 residues within 4Å: Chain A: E.210, L.245, L.247, V.249, D.250 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:E.210, A:P.248

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Zocher, G. et al., Structure-based engineering increased the catalytic turnover rate of a novel phenazine prenyltransferase. Plos One (2012)

Release Date

2012-11-14

Peptides

Prenyltransferase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Prenyltransferase

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