SMTL ID : 4efk.2 (1 other biounit)

Pantothenate synthetase in complex with N,N-DIMETHYLTHIOPHENE-3-SULFONAMIDE

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.70 Å

Oligo State

homo-dimer

Ligands

3 x 0OC: N,N-dimethylthiophene-3-sulfonamide(Non-covalent)

0OC.1: 12 residues within 4Å: Chain A: P.38, T.39, M.40, F.67, N.69, V.139, V.142, V.143, L.146, F.157, Q.164 Ligands: EOH.6 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:V.142 Water bridges: A:T.39, A:Q.164 0OC.9: 11 residues within 4Å: Chain B: P.38, T.39, M.40, F.67, N.69, V.139, V.142, V.143, L.146, F.157, Q.164 2 PLIP interactions: 2 interactions with chain B Hydrophobic interactions: B:V.142 Water bridges: B:T.39 0OC.10: 3 residues within 4Å: Chain B: P.70, M.71, Q.72 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:Q.72

3 x GOL: GLYCEROL(Non-functional Binders)

GOL.2: 5 residues within 4Å: Chain A: G.244, A.246, R.273, L.274, G.275 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:G.244, A:R.273, A:G.275, A:G.275 Water bridges: A:Q.206 GOL.4: 7 residues within 4Å: Chain A: A.21, S.24, R.25, Q.148, I.149, V.150, R.151 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:A.21, A:R.25, A:R.25, A:R.25, A:Q.148 GOL.11: 9 residues within 4Å: Chain B: M.109, Y.110, P.111, D.112, G.113, L.114, R.115, T.116, K.145 5 PLIP interactions: 5 interactions with chain B Hydrogen bonds: B:M.109, B:D.112, B:R.115, B:T.116, B:K.145

1 x SO4: SULFATE ION(Non-functional Binders)

SO4.3: 7 residues within 4Å: Chain A: H.44, G.46, H.47, L.50, K.160, D.161 Ligands: EOH.6 2 PLIP interactions: 2 interactions with chain A Water bridges: A:G.158 Salt bridges: A:H.47

7 x EOH: ETHANOL(Non-functional Binders)

EOH.5: 3 residues within 4Å: Chain A: F.6, A.26, L.27 1 PLIP interactions: 1 interactions with chain A Hydrophobic interactions: A:F.6 EOH.6: 5 residues within 4Å: Chain A: T.39, M.40, H.47 Ligands: 0OC.1, SO4.3 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:M.40 EOH.7: 3 residues within 4Å: Chain A: Q.206, G.275, T.276 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:Q.206 EOH.8: 5 residues within 4Å: Chain A: E.126, R.253, L.257, G.258, P.259 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:L.257 EOH.12: 3 residues within 4Å: Chain B: L.114, R.115, T.117 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:T.117 EOH.13: 3 residues within 4Å: Chain A: H.222, T.225 Chain B: T.218 2 PLIP interactions: 1 interactions with chain B, 1 interactions with chain A Hydrogen bonds: B:T.218 Hydrophobic interactions: A:T.225 EOH.15: 5 residues within 4Å: Chain B: S.24, R.25, R.28, V.150, R.151 1 PLIP interactions: 1 interactions with chain B Hydrophobic interactions: B:R.28

1 x IMD: IMIDAZOLE(Non-covalent)

IMD.14: 4 residues within 4Å: Chain B: P.70, Q.72, Y.110, L.114 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:Q.72 Water bridges: B:Q.72 pi-Stacking: B:Y.110

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Silvestre, H.L. et al., Integrated biophysical approach to fragment screening and validation for fragment-based lead discovery. Proc.Natl.Acad.Sci.USA (2013)

Release Date

2013-03-13

Peptides

Pantothenate synthetase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

B
A

Pantothenate synthetase

Related Entries With Identical Sequence