SMTL ID : 4efz.1 (2 other biounits)

Crystal Structure of a hypothetical metallo-beta-lactamase from Burkholderia pseudomallei

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.60 Å

Oligo State

homo-dimer

Ligands

2 x CA: CALCIUM ION(Non-covalent)

CA.1: 3 residues within 4Å: Chain A: H.72, H.147, D.174 6 PLIP interactions: 3 interactions with chain A, 3 Ligand-Water interactions Metal complexes: A:H.72, A:H.147, A:D.174, H2O.9, H2O.9, H2O.9 CA.12: 3 residues within 4Å: Chain B: H.72, H.147, D.174 6 PLIP interactions: 3 interactions with chain B, 3 Ligand-Water interactions Metal complexes: B:H.72, B:H.147, B:D.174, H2O.12, H2O.15, H2O.19

3 x CL: CHLORIDE ION(Non-functional Binders)

CL.2: 2 residues within 4Å: Chain A: P.189, G.190 Ligand excluded by PLIP CL.3: 1 residues within 4Å: Chain A: H.117 Ligand excluded by PLIP CL.13: 1 residues within 4Å: Chain B: G.190 Ligand excluded by PLIP

8 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.4: 8 residues within 4Å: Chain A: F.10, S.19, S.35, V.36, S.50, A.51, Q.53, L.54 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:S.19, A:V.36, A:V.36, A:Q.53 EDO.5: 7 residues within 4Å: Chain A: R.100, V.101, V.104, P.149, F.188, P.189, G.190 No protein-ligand interaction detected (PLIP) EDO.6: 10 residues within 4Å: Chain A: L.32, I.33, D.34, S.35, L.68, L.69, E.70, S.79, A.81, L.84 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:D.34, A:S.35, A:S.35, A:E.70 EDO.7: 2 residues within 4Å: Chain A: R.96, L.125 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:R.96, A:R.96 EDO.8: 4 residues within 4Å: Chain A: L.37, T.46, T.48, Y.83 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:T.46, A:T.46 EDO.9: 7 residues within 4Å: Chain A: R.185, D.187, F.188, P.189, M.263, P.264, M.267 2 PLIP interactions: 2 interactions with chain A Water bridges: A:D.187, A:F.188 EDO.14: 7 residues within 4Å: Chain B: R.96, H.97, L.126, D.127, D.128, H.143, M.152 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:R.96, B:L.126, B:D.128 Water bridges: B:H.97 EDO.15: 3 residues within 4Å: Chain B: R.47, T.48, A.49 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:T.48

3 x SO4: SULFATE ION(Non-functional Binders)

SO4.10: 3 residues within 4Å: Chain A: H.97, R.100, H.143 5 PLIP interactions: 5 interactions with chain A Water bridges: A:H.143, A:P.149 Salt bridges: A:H.97, A:R.100, A:H.143 SO4.11: 2 residues within 4Å: Chain A: P.220, N.221 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.221 SO4.17: 3 residues within 4Å: Chain B: H.97, R.100, H.143 5 PLIP interactions: 5 interactions with chain B Water bridges: B:R.100, B:H.143 Salt bridges: B:H.97, B:R.100, B:H.143

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.16: 2 residues within 4Å: Chain B: R.100, P.149 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:R.100

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Fairman, J.W. et al., Crystal Structure of a hypothetical metallo-beta-lactamase from Burkholderia pseudomallei. TO BE PUBLISHED

Release Date

2012-05-09

Peptides

Metallo-beta-lactamase family protein: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

B
A

Metallo-beta-lactamase family protein

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