- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.20 Å
- Oligo State
- homo-dimer
- Ligands
- 16 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)
- 18 x ZN: ZINC ION(Non-covalent)
ZN.9: 4 residues within 4Å:- Chain A: Q.268, E.372
- Ligands: ZN.10, UNX.22
2 PLIP interactions:2 interactions with chain A- Metal complexes: A:E.372, A:E.372
ZN.10: 5 residues within 4Å:- Chain A: R.272, H.371
- Ligands: ZN.9, UNX.22, UNX.23
1 PLIP interactions:1 interactions with chain A- Metal complexes: A:H.371
ZN.11: 8 residues within 4Å:- Chain A: D.246, H.310, S.337, E.339, E.353
- Ligands: ZN.12, UNX.18, UNX.20
4 PLIP interactions:4 interactions with chain A- Metal complexes: A:D.246, A:H.310, A:E.339, A:E.353
ZN.12: 7 residues within 4Å:- Chain A: D.234, D.246, T.248, E.353
- Ligands: ZN.11, UNX.18, UNX.20
4 PLIP interactions:4 interactions with chain A- Metal complexes: A:D.234, A:D.234, A:D.246, A:E.353
ZN.13: 5 residues within 4Å:- Chain A: D.41, T.118, D.119, R.148
- Ligands: EDO.5
4 PLIP interactions:3 interactions with chain A, 1 Ligand-Water interactions- Metal complexes: A:D.41, A:D.41, A:D.119, H2O.4
ZN.14: 3 residues within 4Å:- Chain A: F.53, E.54
- Chain B: H.317
5 PLIP interactions:2 interactions with chain A, 1 interactions with chain B, 2 Ligand-Water interactions- Metal complexes: A:E.54, A:E.54, B:H.317, H2O.4, H2O.5
ZN.15: 2 residues within 4Å:- Chain A: C.90, R.92
2 PLIP interactions:1 interactions with chain A, 1 Ligand-Water interactions- Metal complexes: A:C.90, H2O.5
ZN.16: 1 residues within 4Å:- Chain A: H.212
4 PLIP interactions:1 interactions with chain A, 3 Ligand-Water interactions- Metal complexes: A:H.212, H2O.6, H2O.6, H2O.6
ZN.17: 2 residues within 4Å:- Chain A: E.75
- Chain B: H.217
5 PLIP interactions:2 interactions with chain A, 1 interactions with chain B, 2 Ligand-Water interactions- Metal complexes: A:E.75, A:E.75, B:H.217, H2O.5, H2O.5
ZN.33: 4 residues within 4Å:- Chain B: Q.268, E.372
- Ligands: ZN.34, UNX.46
2 PLIP interactions:2 interactions with chain B- Metal complexes: B:E.372, B:E.372
ZN.34: 5 residues within 4Å:- Chain B: R.272, H.371
- Ligands: ZN.33, UNX.46, UNX.47
1 PLIP interactions:1 interactions with chain B- Metal complexes: B:H.371
ZN.35: 8 residues within 4Å:- Chain B: D.246, H.310, S.337, E.339, E.353
- Ligands: ZN.36, UNX.42, UNX.44
4 PLIP interactions:4 interactions with chain B- Metal complexes: B:D.246, B:H.310, B:E.339, B:E.353
ZN.36: 7 residues within 4Å:- Chain B: D.234, D.246, T.248, E.353
- Ligands: ZN.35, UNX.42, UNX.44
4 PLIP interactions:4 interactions with chain B- Metal complexes: B:D.234, B:D.234, B:D.246, B:E.353
ZN.37: 5 residues within 4Å:- Chain B: D.41, T.118, D.119, R.148
- Ligands: EDO.29
4 PLIP interactions:3 interactions with chain B, 1 Ligand-Water interactions- Metal complexes: B:D.41, B:D.41, B:D.119, H2O.11
ZN.38: 3 residues within 4Å:- Chain A: H.317
- Chain B: F.53, E.54
5 PLIP interactions:1 interactions with chain A, 2 interactions with chain B, 2 Ligand-Water interactions- Metal complexes: A:H.317, B:E.54, B:E.54, H2O.11, H2O.12
ZN.39: 2 residues within 4Å:- Chain B: C.90, R.92
2 PLIP interactions:1 interactions with chain B, 1 Ligand-Water interactions- Metal complexes: B:C.90, H2O.12
ZN.40: 1 residues within 4Å:- Chain B: H.212
4 PLIP interactions:1 interactions with chain B, 3 Ligand-Water interactions- Metal complexes: B:H.212, H2O.12, H2O.12, H2O.12
ZN.41: 2 residues within 4Å:- Chain A: H.217
- Chain B: E.75
5 PLIP interactions:1 interactions with chain A, 2 interactions with chain B, 2 Ligand-Water interactions- Metal complexes: A:H.217, B:E.75, B:E.75, H2O.11, H2O.11
- 14 x UNX: UNKNOWN ATOM OR ION(Non-functional Binders)
UNX.18: 10 residues within 4Å:- Chain A: D.234, D.246, H.310, E.339, E.353
- Ligands: ZN.11, ZN.12, UNX.19, UNX.20, UNX.21
No protein-ligand interaction detected (PLIP)UNX.19: 5 residues within 4Å:- Chain A: D.234, E.339
- Ligands: UNX.18, UNX.20, UNX.21
No protein-ligand interaction detected (PLIP)UNX.20: 7 residues within 4Å:- Chain A: D.234, E.339
- Ligands: ZN.11, ZN.12, UNX.18, UNX.19, UNX.21
No protein-ligand interaction detected (PLIP)UNX.21: 5 residues within 4Å:- Chain A: H.310, E.339
- Ligands: UNX.18, UNX.19, UNX.20
No protein-ligand interaction detected (PLIP)UNX.22: 2 residues within 4Å:- Ligands: ZN.9, ZN.10
No protein-ligand interaction detected (PLIP)UNX.23: 2 residues within 4Å:- Chain A: H.371
- Ligands: ZN.10
No protein-ligand interaction detected (PLIP)UNX.24: 2 residues within 4Å:- Chain A: D.215, H.218
No protein-ligand interaction detected (PLIP)UNX.42: 10 residues within 4Å:- Chain B: D.234, D.246, H.310, E.339, E.353
- Ligands: ZN.35, ZN.36, UNX.43, UNX.44, UNX.45
No protein-ligand interaction detected (PLIP)UNX.43: 5 residues within 4Å:- Chain B: D.234, E.339
- Ligands: UNX.42, UNX.44, UNX.45
No protein-ligand interaction detected (PLIP)UNX.44: 7 residues within 4Å:- Chain B: D.234, E.339
- Ligands: ZN.35, ZN.36, UNX.42, UNX.43, UNX.45
No protein-ligand interaction detected (PLIP)UNX.45: 5 residues within 4Å:- Chain B: H.310, E.339
- Ligands: UNX.42, UNX.43, UNX.44
No protein-ligand interaction detected (PLIP)UNX.46: 2 residues within 4Å:- Ligands: ZN.33, ZN.34
No protein-ligand interaction detected (PLIP)UNX.47: 2 residues within 4Å:- Chain B: H.371
- Ligands: ZN.34
No protein-ligand interaction detected (PLIP)UNX.48: 2 residues within 4Å:- Chain B: D.215, H.218
No protein-ligand interaction detected (PLIP)- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Baugh, L. et al., Increasing the structural coverage of tuberculosis drug targets. Tuberculosis (Edinb) (2015)
- Release Date
- 2012-04-25
- Peptides
- Dipeptidase PepE: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
A
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.20 Å
- Oligo State
- homo-dimer
- Ligands
- 16 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)
- 18 x ZN: ZINC ION(Non-covalent)
- 14 x UNX: UNKNOWN ATOM OR ION(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Baugh, L. et al., Increasing the structural coverage of tuberculosis drug targets. Tuberculosis (Edinb) (2015)
- Release Date
- 2012-04-25
- Peptides
- Dipeptidase PepE: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
A