SMTL ID : 4egp.1 (1 other biounit)

The X-ray crystal structure of CYP199A4 in complex with 2-naphthoic acid

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 3.00 Å

Oligo State

monomer

Ligands

1 x HEM: PROTOPORPHYRIN IX CONTAINING FE(Non-covalent)

HEM.1: 27 residues within 4Å: Chain A: I.98, L.99, H.106, R.110, L.113, L.117, S.245, A.249, G.250, T.253, T.254, F.286, P.295, V.296, F.299, R.301, G.351, F.352, G.353, V.356, H.357, C.359, V.360, G.361, V.364, A.365 Ligands: FIV.2 16 PLIP interactions: 16 interactions with chain A, Hydrophobic interactions: A:L.99, A:L.113, A:L.117, A:T.254, A:F.286, A:P.295, A:F.299, A:F.352, A:V.360, A:V.364 Salt bridges: A:H.106, A:R.110, A:R.301, A:H.357, A:H.357 Metal complexes: A:C.359

2 x FIV: naphthalene-2-carboxylic acid(Non-covalent)

FIV.2: 10 residues within 4Å: Chain A: R.93, S.96, L.99, V.182, F.183, R.244, S.245, S.248, A.249 Ligands: HEM.1 8 PLIP interactions: 8 interactions with chain A Hydrophobic interactions: A:L.99, A:V.182, A:F.183, A:A.249 Hydrogen bonds: A:S.248, A:S.248 Salt bridges: A:R.93, A:R.244 FIV.3: 7 residues within 4Å: Chain A: L.176, G.180, L.181, N.184, A.196, D.252, R.392 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:A.196 Salt bridges: A:R.392

2 x SO4: SULFATE ION(Non-functional Binders)

SO4.4: 1 residues within 4Å: Chain A: R.108 3 PLIP interactions: 3 interactions with chain A Water bridges: A:A.105, A:R.108 Salt bridges: A:R.108 SO4.5: 3 residues within 4Å: Chain A: R.110, S.114 Ligands: GOL.6 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:S.114 Salt bridges: A:R.110

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.6: 8 residues within 4Å: Chain A: R.110, S.114, L.117, S.118, V.360, Q.362, L.363 Ligands: SO4.5 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:L.117

1 x CL: CHLORIDE ION(Non-functional Binders)

CL.7: 4 residues within 4Å: Chain A: R.93, Y.178, Q.204, R.244 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Bell, S.G. et al., Investigation of the substrate range of CYP199A4: modification of the partition between hydroxylation and desaturation activities by substrate and protein engineering. Chemistry (2012)

Release Date

2013-02-20

Peptides

Cytochrome P450: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Cytochrome P450

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