SMTL ID : 4em6.2 (1 other biounit)

The structure of Glucose-6-phosphate isomerase (GPI) from Brucella melitensis

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.90 Å

Oligo State

homo-dimer

Ligands

5 x CA: CALCIUM ION(Non-covalent)

CA.1: 1 residues within 4Å: Chain A: G.535 5 PLIP interactions: 1 interactions with chain A, 4 Ligand-Water interactions Metal complexes: A:G.535, H2O.26, H2O.26, H2O.26, H2O.26 CA.6: 1 residues within 4Å: Chain B: A.37 3 PLIP interactions: 1 interactions with chain B, 2 Ligand-Water interactions Metal complexes: B:A.37, H2O.48, H2O.50 CA.7: 3 residues within 4Å: Chain A: R.459 Chain B: D.366, G.367 5 PLIP interactions: 1 interactions with chain B, 4 Ligand-Water interactions Metal complexes: B:D.366, H2O.50, H2O.50, H2O.50, H2O.50 CA.8: 2 residues within 4Å: Chain B: A.173, H.176 5 PLIP interactions: 2 interactions with chain B, 3 Ligand-Water interactions Metal complexes: B:A.173, B:H.176, H2O.50, H2O.50, H2O.50 CA.11: 1 residues within 4Å: Chain B: G.331 4 PLIP interactions: 1 interactions with chain B, 3 Ligand-Water interactions Metal complexes: B:G.331, H2O.36, H2O.39, H2O.49

6 x CL: CHLORIDE ION(Non-functional Binders)

CL.2: 3 residues within 4Å: Chain A: G.160, G.271, Q.353 Ligand excluded by PLIP CL.3: 4 residues within 4Å: Chain A: D.200, P.201, A.202, T.232 Ligand excluded by PLIP CL.5: 4 residues within 4Å: Chain B: A.248, L.249, D.250, K.251 Ligand excluded by PLIP CL.9: 2 residues within 4Å: Chain B: R.148, K.149 Ligand excluded by PLIP CL.10: 3 residues within 4Å: Chain B: G.160, G.271, Q.353 Ligand excluded by PLIP CL.12: 2 residues within 4Å: Chain A: G.333 Chain B: G.333 Ligand excluded by PLIP

1 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.4: 2 residues within 4Å: Chain B: A.193, W.228 1 PLIP interactions: 1 interactions with chain B Water bridges: B:T.224

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Clifton, M.C. et al., The structure of Glucose-6-phosphate isomerase (GPI) from Brucella melitensis. TO BE PUBLISHED

Release Date

2012-05-02

Peptides

Glucose-6-phosphate isomerase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
C

Glucose-6-phosphate isomerase

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