SMTL ID : 4emv.1

Crystal structure of a topoisomerase ATP inhibitor

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.70 Å

Oligo State

monomer

Ligands

1 x 0R9: 5-{2-(ethylcarbamoyl)-4-[3-(trifluoromethyl)-1H-pyrazol-1-yl]-1H-pyrrolo[2,3-b]pyridin-5-yl}pyridine-3-carboxylic acid(Non-covalent)

0R9.1: 16 residues within 4Å: Chain A: I.48, N.51, A.52, E.55, V.76, D.78, R.81, G.82, M.83, P.84, T.94, I.98, H.120, V.122, R.140, T.172 13 PLIP interactions: 13 interactions with chain A Hydrophobic interactions: A:V.76, A:V.122 Hydrogen bonds: A:N.51, A:D.78, A:D.78, A:T.172 Water bridges: A:R.81, A:R.81, A:G.82, A:R.140 Salt bridges: A:R.81, A:R.140 pi-Cation interactions: A:R.81

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Manchester, J.I. et al., Discovery of a novel azaindole class of antibacterial agents targeting the ATPase domains of DNA gyrase and Topoisomerase IV. Bioorg.Med.Chem.Lett. (2012)

Release Date

2012-08-01

Peptides

DNA topoisomerase IV, B subunit: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

DNA topoisomerase IV, B subunit

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